RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 CCDC93Q567U6 631 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 CYP4F22Q6NT55 531 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 OLFM4Q6UX06 510 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 NBPF5PQ86XG9 351 aaPredicted RBP9.36□□□□□ -0.91
HDAC1-204ENST00000471488 MASTLQ96GX5 879 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 PDZRN3Q9UPQ7 1066 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 COL11A2P13942 1736 aaPredicted RBP9.36□□□□□ -0.91
HDAC1-204ENST00000471488 NRXN2Q9P2S2 1712 aa9.36□□□□□ -0.91
HDAC1-204ENST00000471488 LTBP3Q9NS15 1303 aa9.35□□□□□ -0.91
HDAC1-204ENST00000471488 DICER1Q9UPY3 1922 aaKnown RBP9.35□□□□□ -0.91
HDAC1-204ENST00000471488 LMOD1P29536 600 aaPredicted RBP9.35□□□□□ -0.91
HDAC1-204ENST00000471488 PIP4K2AP48426 406 aaPredicted RBP9.35□□□□□ -0.91
HDAC1-204ENST00000471488 FMR1Q06787 632 aaKnown RBP eCLIP9.35□□□□□ -0.91
HDAC1-204ENST00000471488 STYK1Q6J9G0 422 aa9.35□□□□□ -0.91
HDAC1-204ENST00000471488 PNMA8AQ86V59 439 aaPredicted RBP9.35□□□□□ -0.91
HDAC1-204ENST00000471488 CAPNS2Q96L46 248 aa9.35□□□□□ -0.91
HDAC1-204ENST00000471488 PANK3Q9H999 370 aa9.35□□□□□ -0.91
HDAC1-204ENST00000471488 SCN11AQ9UI33 1791 aa9.35□□□□□ -0.91
HDAC1-204ENST00000471488 FER1L6Q2WGJ9 1857 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 ANKRD31Q8N7Z5 1873 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 SLX4Q8IY92 1834 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 RASSF10A6NK89 507 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 AOC2O75106 756 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 SRGNP10124 158 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 GTF2E1P29083 439 aaPredicted RBP9.34□□□□□ -0.91
HDAC1-204ENST00000471488 ECE1P42892 770 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 TEFQ10587 303 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 L3MBTL3Q96JM7 780 aaPredicted RBP9.34□□□□□ -0.91
HDAC1-204ENST00000471488 GPR101Q96P66 508 aaPredicted RBP9.34□□□□□ -0.91
HDAC1-204ENST00000471488 ZNF408Q9H9D4 720 aa9.34□□□□□ -0.91
HDAC1-204ENST00000471488 DDX21Q9NR30 783 aaKnown RBP eCLIP9.34□□□□□ -0.91
HDAC1-204ENST00000471488 TCERG1O14776 1098 aaKnown RBP9.33□□□□□ -0.92
HDAC1-204ENST00000471488 A1BGP04217 495 aa9.33□□□□□ -0.92
HDAC1-204ENST00000471488 EIF5P55010 431 aaKnown RBP9.33□□□□□ -0.92
HDAC1-204ENST00000471488 FKBP4Q02790 459 aaKnown RBP eCLIP9.33□□□□□ -0.92
HDAC1-204ENST00000471488 DZIP3Q86Y13 1208 aaKnown RBP9.33□□□□□ -0.92
HDAC1-204ENST00000471488 JDP2Q8WYK2 163 aa9.33□□□□□ -0.92
HDAC1-204ENST00000471488 PCDH10Q9P2E7 1040 aa9.33□□□□□ -0.92
HDAC1-204ENST00000471488 VIRMAQ69YN4 1812 aaKnown RBP9.33□□□□□ -0.92
HDAC1-204ENST00000471488 TRAF5O00463 557 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 NPR1P16066 1061 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 IL13P35225 146 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 IARSP41252 1262 aaKnown RBP9.32□□□□□ -0.92
HDAC1-204ENST00000471488 EIF6P56537 245 aaKnown RBP9.32□□□□□ -0.92
HDAC1-204ENST00000471488 DGKZQ13574 1117 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 MTHFSDQ2M296 383 aaKnown RBP9.32□□□□□ -0.92
HDAC1-204ENST00000471488 VSIG10Q8N0Z9 540 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 SYNE4Q8N205 404 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 ZNF496Q96IT1 587 aaPredicted RBP9.32□□□□□ -0.92
HDAC1-204ENST00000471488 MCOLN1Q9GZU1 580 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 SCN4AP35499 1836 aa9.32□□□□□ -0.92
HDAC1-204ENST00000471488 RTKN2Q8IZC4 609 aa9.31□□□□□ -0.92
HDAC1-204ENST00000471488 KNSTRNQ9Y448 316 aa9.31□□□□□ -0.92
HDAC1-204ENST00000471488 U2SURPO15042 1029 aaKnown RBP9.3□□□□□ -0.92
HDAC1-204ENST00000471488 CAMTA2O94983 1202 aa9.3□□□□□ -0.92
HDAC1-204ENST00000471488 IL6STP40189 918 aaPredicted RBP9.3□□□□□ -0.92
HDAC1-204ENST00000471488 EPS15P42566 896 aa9.3□□□□□ -0.92
HDAC1-204ENST00000471488 ZNF790Q6PG37 636 aa9.3□□□□□ -0.92
HDAC1-204ENST00000471488 GPC2Q8N158 579 aa9.3□□□□□ -0.92
HDAC1-204ENST00000471488 TEX13AQ9BXU3 409 aaPredicted RBP9.3□□□□□ -0.92
HDAC1-204ENST00000471488 NIP7Q9Y221 180 aaKnown RBP eCLIP9.3□□□□□ -0.92
HDAC1-204ENST00000471488 ZNF652Q9Y2D9 606 aa9.3□□□□□ -0.92
HDAC1-204ENST00000471488 SCN7AQ01118 1682 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 HEG1Q9ULI3 1381 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 CELF2O95319 508 aaKnown RBP9.29□□□□□ -0.92
HDAC1-204ENST00000471488 SOX10P56693 466 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 TPTE2Q6XPS3 522 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 LARGE2Q8N3Y3 721 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 NGEFQ8N5V2 710 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 FMNL2Q96PY5 1086 aa9.29□□□□□ -0.92
HDAC1-204ENST00000471488 BTBD11A6QL63 1104 aa9.28□□□□□ -0.92
HDAC1-204ENST00000471488 FZD9O00144 591 aa9.28□□□□□ -0.92
HDAC1-204ENST00000471488 ALDH1B1P30837 517 aa9.28□□□□□ -0.92
HDAC1-204ENST00000471488 RPGRQ92834 1020 aaKnown RBP9.28□□□□□ -0.92
HDAC1-204ENST00000471488 MRC1P22897 1456 aa9.28□□□□□ -0.92
HDAC1-204ENST00000471488 GNAT3A8MTJ3 354 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 KCNQ3O43525 872 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 DIAPH1O60610 1272 aaKnown RBP9.27□□□□□ -0.93
HDAC1-204ENST00000471488 RGS19P49795 217 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 CST9Q5W186 159 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 CIAPIN1Q6FI81 312 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 NIM1KQ8IY84 436 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 C7orf43Q8WVR3 580 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 TLL2Q9Y6L7 1015 aa9.27□□□□□ -0.93
HDAC1-204ENST00000471488 PRAMEF22A3QJZ6 481 aa9.26□□□□□ -0.93
HDAC1-204ENST00000471488 CC2D1BQ5T0F9 858 aaKnown RBP9.26□□□□□ -0.93
HDAC1-204ENST00000471488 NUTM1Q86Y26 1132 aa9.26□□□□□ -0.93
HDAC1-204ENST00000471488 GLIS2Q9BZE0 524 aaPredicted RBP9.26□□□□□ -0.93
HDAC1-204ENST00000471488 TMX4Q9H1E5 349 aaPredicted RBP9.26□□□□□ -0.93
HDAC1-204ENST00000471488 USP16Q9Y5T5 823 aa9.26□□□□□ -0.93
HDAC1-204ENST00000471488 ARFGEF2Q9Y6D5 1785 aa9.26□□□□□ -0.93
HDAC1-204ENST00000471488 UBR2Q8IWV8 1755 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 ADAMTSL1Q8N6G6 1762 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 CASP8AP2Q9UKL3 1982 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 PPIP5K2O43314 1243 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 CA12O43570 354 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 HSPA5P11021 654 aaKnown RBP9.25□□□□□ -0.93
HDAC1-204ENST00000471488 MAP2K2P36507 400 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 SCNN1DP51172 638 aa9.25□□□□□ -0.93
HDAC1-204ENST00000471488 USP50Q70EL3 339 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms