RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 USP17L19D6RCP7 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L20D6RJB6 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 ATG7O95352 703 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 RASA1P20936 1047 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 ADD1P35611 737 aaKnown RBP5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 CLDN10P78369 228 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 USP17L24Q0WX57 530 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 CBLBQ13191 982 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 LARP1Q6PKG0 1096 aaKnown RBP5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 LARGE2Q8N3Y3 721 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 DNAAF2Q9NVR5 837 aaKnown RBP5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 PCDHGA11Q9Y5H2 935 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 ACIN1Q9UKV3 1341 aaKnown RBP5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 WASHC2CQ9Y4E1 1318 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 KANK1Q14678 1352 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 ATP10AO60312 1499 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 HECW2Q9P2P5 1572 aa5.89□□□□□ -1.47
TMEM39A-204ENST00000468545 GCC2Q8IWJ2 1684 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 RICTORQ6R327 1708 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 C11orf95C9JLR9 678 aaPredicted RBP5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 GNRH1P01148 92 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 PSME1Q06323 249 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 PTK7Q13308 1070 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 ELOAQ14241 798 aaKnown RBP5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 CRTC2Q53ET0 693 aaPredicted RBP5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 CDCA8Q53HL2 280 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 SIX5Q8N196 739 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 KDM5CP41229 1560 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 FRMPD1Q5SYB0 1578 aa5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 INO80Q9ULG1 1556 aaPredicted RBP5.88□□□□□ -1.47
TMEM39A-204ENST00000468545 WASLO00401 505 aaPredicted RBP5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 ZNF594Q96JF6 807 aaPredicted RBP5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 TSEN34Q9BSV6 310 aaKnown RBP5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 KIAA1024Q9UPX6 916 aa5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 ERBINQ96RT1 1412 aa5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 MAGI2Q86UL8 1455 aa5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 PLXNC1O60486 1568 aa5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 ABCA6Q8N139 1617 aa5.87□□□□□ -1.47
TMEM39A-204ENST00000468545 DIP2CQ9Y2E4 1556 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 ZBTB7BO15156 539 aaPredicted RBP5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 UPP2O95045 317 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 ZEB1P37275 1124 aaPredicted RBP5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 PTGIRP43119 386 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 SCNN1DP51172 638 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 ESCO1Q5FWF5 840 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 CCDC102BQ68D86 513 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 LINC00528Q8N1L1 170 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 KDF1Q8NAX2 398 aaPredicted RBP5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 TPCN2Q8NHX9 752 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 AGBL1Q96MI9 1066 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 ARHGEF10LQ9HCE6 1279 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 ATP13A2Q9NQ11 1180 aa5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 NOVA2Q9UNW9 492 aaKnown RBP5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 RBM19Q9Y4C8 960 aaKnown RBP5.86□□□□□ -1.47
TMEM39A-204ENST00000468545 PZPP20742 1482 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 DKK1O94907 266 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 GDF10P55107 478 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 RELBQ01201 579 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 MRPL14Q6P1L8 145 aaKnown RBP5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 ANKMY2Q8IV38 441 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 ARXQ96QS3 562 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 ETNK1Q9HBU6 452 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 ZMIZ1Q9ULJ6 1067 aa5.85□□□□□ -1.47
TMEM39A-204ENST00000468545 ZMYM4Q5VZL5 1548 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 A0A1W2PRU2 124 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 TMEM229AB2RXF0 380 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 M0R2N6 131 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 INHAP05111 366 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 CSB-PGBD3P0DP91 1061 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 BMP1P13497 986 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 SEC13P55735 322 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 DPYDQ12882 1025 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 CLN3Q13286 438 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 RGL3Q3MIN7 710 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 RAB6BQ9NRW1 208 aa5.84□□□□□ -1.47
TMEM39A-204ENST00000468545 FAM135AQ9P2D6 1515 aa5.84□□□□□ -1.48
TMEM39A-204ENST00000468545 BACH1O14867 736 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 SPINT1O43278 529 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 STAU1O95793 577 aaKnown RBP5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 IL2RAP01589 272 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 SNRPBP14678 240 aaKnown RBP5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 CEBPAP49715 358 aaPredicted RBP5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 SCARF1Q14162 830 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 TRIM46Q7Z4K8 759 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 RETREG2Q8NC44 543 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 FAM200AQ8TCP9 573 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 STK32AQ8WU08 396 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 ESYT1Q9BSJ8 1104 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 ZNF395Q9H8N7 513 aaPredicted RBP5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 ZNF358Q9NW07 568 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 USTQ9Y2C2 406 aa5.83□□□□□ -1.48
TMEM39A-204ENST00000468545 ANKRD30BQ9BXX2 1392 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 CLSPNQ9HAW4 1339 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 SFI1A8K8P3 1242 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 MEN1O00255 615 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 BMP2P12643 396 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 TMEM164Q5U3C3 297 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 TREML4Q6UXN2 200 aa5.82□□□□□ -1.48
TMEM39A-204ENST00000468545 CNKSR1Q969H4 720 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms