RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PDE4DIPQ5VU43 2346 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 THSD7BQ9C0I4 1608 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 PPP2R1AP30153 589 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 SOGA3Q5TF21 947 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 BICDL1Q6ZP65 573 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 AEBP1Q8IUX7 1158 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 ABT1Q9ULW3 272 aaKnown RBP15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 COL3A1P02461 1466 aaPredicted RBP15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 TRPM7Q96QT4 1865 aa15.95■□□□□ 0.14
SQSTM1-206ENST00000466342 EPHX2P34913 555 aa15.94■□□□□ 0.14
SQSTM1-206ENST00000466342 RALBP1Q15311 655 aa15.94■□□□□ 0.14
SQSTM1-206ENST00000466342 PNMA8AQ86V59 439 aaPredicted RBP15.94■□□□□ 0.14
SQSTM1-206ENST00000466342 CNKSR1Q969H4 720 aa15.94■□□□□ 0.14
SQSTM1-206ENST00000466342 ZBTB1Q9Y2K1 713 aa15.94■□□□□ 0.14
SQSTM1-206ENST00000466342 MAP1SQ66K74 1059 aaPredicted RBP15.93■□□□□ 0.14
SQSTM1-206ENST00000466342 GPR101Q96P66 508 aaPredicted RBP15.93■□□□□ 0.14
SQSTM1-206ENST00000466342 DIAPH1O60610 1272 aaKnown RBP15.92■□□□□ 0.14
SQSTM1-206ENST00000466342 ECE1P42892 770 aa15.92■□□□□ 0.14
SQSTM1-206ENST00000466342 CAPNS2Q96L46 248 aa15.92■□□□□ 0.14
SQSTM1-206ENST00000466342 MCOLN1Q9GZU1 580 aa15.92■□□□□ 0.14
SQSTM1-206ENST00000466342 TBC1D9BQ66K14 1250 aa15.91■□□□□ 0.14
SQSTM1-206ENST00000466342 STYK1Q6J9G0 422 aa15.91■□□□□ 0.14
SQSTM1-206ENST00000466342 PRR5LQ6MZQ0 368 aa15.91■□□□□ 0.14
SQSTM1-206ENST00000466342 CCDC24Q8N4L8 307 aa15.91■□□□□ 0.14
SQSTM1-206ENST00000466342 DDX21Q9NR30 783 aaKnown RBP eCLIP15.91■□□□□ 0.14
SQSTM1-206ENST00000466342 PRPF40BQ6NWY9 871 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-206ENST00000466342 SLC52A2Q9HAB3 445 aa15.9■□□□□ 0.14
SQSTM1-206ENST00000466342 SRGNP10124 158 aa15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 CANXP27824 592 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 CYP4F22Q6NT55 531 aa15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 PAXIP1Q6ZW49 1069 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 CFAP53Q96M91 514 aa15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 TSKSQ9UJT2 592 aa15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 ZNF541Q9H0D2 1346 aa15.89■□□□□ 0.13
SQSTM1-206ENST00000466342 A0A087WZG4 1122 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 MAP2K2P36507 400 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 EIF5P55010 431 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 SLC39A6Q13433 755 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 AKAP4Q5JQC9 854 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 VSIG10Q8N0Z9 540 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 C7orf43Q8WVR3 580 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 MASTLQ96GX5 879 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 PRKRIP1Q9H875 184 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 RNF123Q5XPI4 1314 aa15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 MYBBP1AQ9BQG0 1328 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-206ENST00000466342 HMOX1P09601 288 aa15.87■□□□□ 0.13
SQSTM1-206ENST00000466342 GRM1Q13255 1194 aa15.87■□□□□ 0.13
SQSTM1-206ENST00000466342 LTBP1Q14766 1721 aa15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 CA12O43570 354 aa15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 FKBP4Q02790 459 aaKnown RBP eCLIP15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 CCDC93Q567U6 631 aa15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 LGR6Q9HBX8 967 aa15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 SCN7AQ01118 1682 aa15.86■□□□□ 0.13
SQSTM1-206ENST00000466342 FZD9O00144 591 aa15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 NPHP1O15259 732 aa15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 DGKZQ13574 1117 aa15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 GPC2Q8N158 579 aa15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 ZNF277Q9NRM2 450 aaPredicted RBP15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 UBR2Q8IWV8 1755 aa15.85■□□□□ 0.13
SQSTM1-206ENST00000466342 AOC2O75106 756 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 STARD3NLO95772 234 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 ST5P78524 1137 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 FMR1Q06787 632 aaKnown RBP eCLIP15.84■□□□□ 0.132e-7■■□□□ 12.3
SQSTM1-206ENST00000466342 CST9Q5W186 159 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 CNBD1Q8NA66 436 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 SETDB2Q96T68 719 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 TLL2Q9Y6L7 1015 aa15.84■□□□□ 0.13
SQSTM1-206ENST00000466342 MTHFSDQ2M296 383 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-206ENST00000466342 TBC1D2BQ9UPU7 963 aa15.83■□□□□ 0.12
SQSTM1-206ENST00000466342 U2SURPO15042 1029 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-206ENST00000466342 RNMTO43148 476 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-206ENST00000466342 RTKN2Q8IZC4 609 aa15.82■□□□□ 0.12
SQSTM1-206ENST00000466342 MRC1P22897 1456 aa15.82■□□□□ 0.12
SQSTM1-206ENST00000466342 ANP32CO43423 234 aa15.81■□□□□ 0.12
SQSTM1-206ENST00000466342 IARSP41252 1262 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-206ENST00000466342 NUDCQ9Y266 331 aa15.81■□□□□ 0.12
SQSTM1-206ENST00000466342 NPR1P16066 1061 aa15.8■□□□□ 0.12
SQSTM1-206ENST00000466342 PRPF38BQ5VTL8 546 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-206ENST00000466342 SYNE4Q8N205 404 aa15.8■□□□□ 0.12
SQSTM1-206ENST00000466342 LMOD1P29536 600 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-206ENST00000466342 IL6STP40189 918 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-206ENST00000466342 BRPF1P55201 1214 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-206ENST00000466342 JDP2Q8WYK2 163 aa15.79■□□□□ 0.12
SQSTM1-206ENST00000466342 TEX13AQ9BXU3 409 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-206ENST00000466342 TRAF5O00463 557 aa15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 OLFM4Q6UX06 510 aa15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 USP50Q70EL3 339 aaPredicted RBP15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 GAS2L2Q8NHY3 880 aa15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 ZNF330Q9Y3S2 320 aaPredicted RBP15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 GJA3Q9Y6H8 435 aa15.78■□□□□ 0.12
SQSTM1-206ENST00000466342 BCORQ6W2J9 1755 aa15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 KLRG2A4D1S0 409 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 CAMTA2O94983 1202 aa15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 U2AF1L5P0DN76 240 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 EPS15P42566 896 aa15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 EIF6P56537 245 aaKnown RBP15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 U2AF1Q01081 240 aaKnown RBP eCLIP15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 SAPCD2Q86UD0 394 aa15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 HHIPL1Q96JK4 782 aa15.77■□□□□ 0.12
SQSTM1-206ENST00000466342 GNAT3A8MTJ3 354 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 187.5 ms