RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 CTCFP49711 727 aaPredicted RBP23.36■■□□□ 1.33
UBE2D4-209ENST00000454428 ZNF330Q9Y3S2 320 aaPredicted RBP23.36■■□□□ 1.33
UBE2D4-209ENST00000454428 MASTLQ96GX5 879 aa23.35■■□□□ 1.33
UBE2D4-209ENST00000454428 SETDB2Q96T68 719 aa23.35■■□□□ 1.33
UBE2D4-209ENST00000454428 WBP1LQ9NX94 342 aa23.35■■□□□ 1.33
UBE2D4-209ENST00000454428 ZNF541Q9H0D2 1346 aa23.34■■□□□ 1.33
UBE2D4-209ENST00000454428 IQCA1LA6NCM1 817 aa23.34■■□□□ 1.33
UBE2D4-209ENST00000454428 TMEM88BA6NKF7 163 aa23.34■■□□□ 1.33
UBE2D4-209ENST00000454428 SOGA3Q5TF21 947 aa23.33■■□□□ 1.33
UBE2D4-209ENST00000454428 TEX13AQ9BXU3 409 aaPredicted RBP23.33■■□□□ 1.33
UBE2D4-209ENST00000454428 ST5P78524 1137 aa23.32■■□□□ 1.32
UBE2D4-209ENST00000454428 COL3A1P02461 1466 aaPredicted RBP23.31■■□□□ 1.32
UBE2D4-209ENST00000454428 DIAPH1O60610 1272 aaKnown RBP23.31■■□□□ 1.32
UBE2D4-209ENST00000454428 LBX1P52954 281 aa23.31■■□□□ 1.32
UBE2D4-209ENST00000454428 AIDAQ96BJ3 306 aa23.31■■□□□ 1.32
UBE2D4-209ENST00000454428 KCNQ3O43525 872 aa23.3■■□□□ 1.32
UBE2D4-209ENST00000454428 SLC34A2O95436 690 aa23.3■■□□□ 1.32
UBE2D4-209ENST00000454428 OLFM4Q6UX06 510 aa23.3■■□□□ 1.32
UBE2D4-209ENST00000454428 KLRG2A4D1S0 409 aaPredicted RBP23.29■■□□□ 1.32
UBE2D4-209ENST00000454428 TEFQ10587 303 aa23.29■■□□□ 1.32
UBE2D4-209ENST00000454428 CCDC93Q567U6 631 aa23.29■■□□□ 1.32
UBE2D4-209ENST00000454428 EAPPQ56P03 285 aaPredicted RBP23.29■■□□□ 1.32
UBE2D4-209ENST00000454428 ZNF277Q9NRM2 450 aaPredicted RBP23.29■■□□□ 1.32
UBE2D4-209ENST00000454428 RASSF10A6NK89 507 aa23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 GNAT3A8MTJ3 354 aa23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 HSPA8P11142 646 aaKnown RBP23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 PIP4K2AP48426 406 aaPredicted RBP23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 FKBP4Q02790 459 aaKnown RBP eCLIP23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 DZIP3Q86Y13 1208 aaKnown RBP23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 FMNL2Q96PY5 1086 aa23.28■■□□□ 1.32
UBE2D4-209ENST00000454428 CEMIPQ8WUJ3 1361 aa23.27■■□□□ 1.32
UBE2D4-209ENST00000454428 HACL1Q9UJ83 578 aa23.27■■□□□ 1.32
UBE2D4-209ENST00000454428 NPHP1O15259 732 aa23.26■■□□□ 1.31
UBE2D4-209ENST00000454428 NPR1P16066 1061 aa23.26■■□□□ 1.31
UBE2D4-209ENST00000454428 EPHX2P34913 555 aa23.26■■□□□ 1.31
UBE2D4-209ENST00000454428 USP16Q9Y5T5 823 aa23.26■■□□□ 1.31
UBE2D4-209ENST00000454428 SNED1Q8TER0 1413 aa23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 PRAMEF22A3QJZ6 481 aa23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 PER1O15534 1290 aaPredicted RBP23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 TRIM26Q12899 539 aaPredicted RBP23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 MAP1SQ66K74 1059 aaPredicted RBP23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 ABHD8Q96I13 439 aa23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 RNF123Q5XPI4 1314 aa23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 CLSPNQ9HAW4 1339 aa23.25■■□□□ 1.31
UBE2D4-209ENST00000454428 THSD7BQ9C0I4 1608 aa23.24■■□□□ 1.31
UBE2D4-209ENST00000454428 FZD9O00144 591 aa23.24■■□□□ 1.31
UBE2D4-209ENST00000454428 NBPF5PQ86XG9 351 aaPredicted RBP23.24■■□□□ 1.31
UBE2D4-209ENST00000454428 CNTROBQ8N137 903 aa23.24■■□□□ 1.31
UBE2D4-209ENST00000454428 LTBP1Q14766 1721 aa23.24■■□□□ 1.31
UBE2D4-209ENST00000454428 COL4A5P29400 1685 aa23.23■■□□□ 1.31
UBE2D4-209ENST00000454428 DEFB115Q30KQ5 88 aa23.23■■□□□ 1.31
UBE2D4-209ENST00000454428 CLEC4GQ6UXB4 293 aa23.23■■□□□ 1.31
UBE2D4-209ENST00000454428 GAS2L2Q8NHY3 880 aa23.23■■□□□ 1.31
UBE2D4-209ENST00000454428 CLEC11AQ9Y240 323 aa23.23■■□□□ 1.31
UBE2D4-209ENST00000454428 WDR33Q9C0J8 1336 aaKnown RBP23.22■■□□□ 1.31
UBE2D4-209ENST00000454428 FAM161AQ3B820 660 aa23.21■■□□□ 1.31
UBE2D4-209ENST00000454428 CC2D1BQ5T0F9 858 aaKnown RBP23.21■■□□□ 1.31
UBE2D4-209ENST00000454428 PNMA8AQ86V59 439 aaPredicted RBP23.21■■□□□ 1.31
UBE2D4-209ENST00000454428 KIF7Q2M1P5 1343 aa23.2■■□□□ 1.3
UBE2D4-209ENST00000454428 BTBD11A6QL63 1104 aa23.2■■□□□ 1.3
UBE2D4-209ENST00000454428 IARSP41252 1262 aaKnown RBP23.2■■□□□ 1.3
UBE2D4-209ENST00000454428 NPM2Q86SE8 214 aaKnown RBP23.2■■□□□ 1.3
UBE2D4-209ENST00000454428 RTKN2Q8IZC4 609 aa23.2■■□□□ 1.3
UBE2D4-209ENST00000454428 U2SURPO15042 1029 aaKnown RBP23.19■■□□□ 1.3
UBE2D4-209ENST00000454428 SYNE4Q8N205 404 aa23.19■■□□□ 1.3
UBE2D4-209ENST00000454428 PHACTR3Q96KR7 559 aa23.19■■□□□ 1.3
UBE2D4-209ENST00000454428 NBPF26B4DH59 902 aa23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 MAP2K1Q02750 393 aaPredicted RBP23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 FMR1Q06787 632 aaKnown RBP eCLIP23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 NBPF10Q6P3W6 841 aaKnown RBP23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 GPC2Q8N158 579 aa23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 NBPF15Q8N660 670 aa23.18■■□□□ 1.3
UBE2D4-209ENST00000454428 DDX21Q9NR30 783 aaKnown RBP eCLIP23.17■■□□□ 1.3
UBE2D4-209ENST00000454428 NIP7Q9Y221 180 aaKnown RBP eCLIP23.17■■□□□ 1.3
UBE2D4-209ENST00000454428 TPTE2Q6XPS3 522 aa23.16■■□□□ 1.3
UBE2D4-209ENST00000454428 ABT1Q9ULW3 272 aaKnown RBP23.16■■□□□ 1.3
UBE2D4-209ENST00000454428 ZNF652Q9Y2D9 606 aa23.16■■□□□ 1.3
UBE2D4-209ENST00000454428 HLFQ16534 295 aa23.15■■□□□ 1.3
UBE2D4-209ENST00000454428 FAM177BA6PVY3 158 aa23.14■■□□□ 1.29
UBE2D4-209ENST00000454428 RGL2O15211 777 aa23.14■■□□□ 1.29
UBE2D4-209ENST00000454428 SLC51AQ86UW1 340 aa23.14■■□□□ 1.29
UBE2D4-209ENST00000454428 PSMD1Q99460 953 aa23.14■■□□□ 1.29
UBE2D4-209ENST00000454428 SNRPA1P09661 255 aaKnown RBP23.13■■□□□ 1.29
UBE2D4-209ENST00000454428 ALDH1B1P30837 517 aa23.13■■□□□ 1.29
UBE2D4-209ENST00000454428 CRY2Q49AN0 593 aa23.13■■□□□ 1.29
UBE2D4-209ENST00000454428 TRPM7Q96QT4 1865 aa23.13■■□□□ 1.29
UBE2D4-209ENST00000454428 ABCC12Q96J65 1359 aa23.13■■□□□ 1.29
UBE2D4-209ENST00000454428 SCNN1DP51172 638 aa23.12■■□□□ 1.29
UBE2D4-209ENST00000454428 CAPNS2Q96L46 248 aa23.12■■□□□ 1.29
UBE2D4-209ENST00000454428 RSPH6AQ9H0K4 717 aa23.12■■□□□ 1.29
UBE2D4-209ENST00000454428 PRKAR2BP31323 418 aa23.11■■□□□ 1.29
UBE2D4-209ENST00000454428 RGS19P49795 217 aa23.11■■□□□ 1.29
UBE2D4-209ENST00000454428 CST9Q5W186 159 aa23.11■■□□□ 1.29
UBE2D4-209ENST00000454428 PCGF6Q9BYE7 350 aa23.11■■□□□ 1.29
UBE2D4-209ENST00000454428 EPS15P42566 896 aa23.1■■□□□ 1.29
UBE2D4-209ENST00000454428 CYP4F22Q6NT55 531 aa23.1■■□□□ 1.29
UBE2D4-209ENST00000454428 GJA3Q9Y6H8 435 aa23.1■■□□□ 1.29
UBE2D4-209ENST00000454428 TNRC18O15417 2968 aaPredicted RBP23.1■■□□□ 1.29
UBE2D4-209ENST00000454428 TRAF5O00463 557 aa23.09■■□□□ 1.29
UBE2D4-209ENST00000454428 JDP2Q8WYK2 163 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms