RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	PDIA6	Q15084	440 aa		20.49	■□□□□ 0.87
TOM1-210	ENST00000449058	TTC14	Q96N46	770 aa		20.49	■□□□□ 0.87
TOM1-210	ENST00000449058	ECHDC1	Q9NTX5	307 aa		20.49	■□□□□ 0.87
TOM1-210	ENST00000449058	GRM8	O00222	908 aa		20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	PROSER2	Q86WR7	435 aa	Predicted RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	KAZALD1	Q96I82	304 aa		20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	ESPN	B1AK53	854 aa		20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	DDX58	O95786	925 aa	Known RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	FOXD4L5	Q5VV16	416 aa	Predicted RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	CWC27	Q6UX04	472 aa	Known RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	PA2G4	Q9UQ80	394 aa	Known RBP	20.48	■□□□□ 0.87
TOM1-210	ENST00000449058	KDM6A	O15550	1401 aa	Predicted RBP	20.47	■□□□□ 0.87
TOM1-210	ENST00000449058	RASEF	Q8IZ41	740 aa		20.47	■□□□□ 0.87
TOM1-210	ENST00000449058	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	20.47	■□□□□ 0.87
TOM1-210	ENST00000449058	ERBB4	Q15303	1308 aa		20.47	■□□□□ 0.87
TOM1-210	ENST00000449058	ABCC6	O95255	1503 aa		20.47	■□□□□ 0.87
TOM1-210	ENST00000449058	KIAA1211	Q6ZU35	1233 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	TRIM44	Q96DX7	344 aa	Predicted RBP	20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	SUCLG2	Q96I99	432 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	C19orf44	Q9H6X5	657 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	COL18A1	P39060	1754 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	MBD3	O95983	291 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	RUFY2	Q8WXA3	655 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	GPATCH3	Q96I76	525 aa		20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	RBM27	Q9P2N5	1060 aa	Known RBP	20.46	■□□□□ 0.87
TOM1-210	ENST00000449058	ZNF790	Q6PG37	636 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	DIAPH3	Q9NSV4	1193 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	TMEM63C	Q9P1W3	806 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	IFIT2	P09913	472 aa	Known RBP	20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	SLC52A2	Q9HAB3	445 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	NSFL1C	Q9UNZ2	370 aa	Known RBP	20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	SPG7	Q9UQ90	795 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	NPHP3	Q7Z494	1330 aa		20.45	■□□□□ 0.86
TOM1-210	ENST00000449058	ZC3H6	P61129	1189 aa	Known RBP	20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	IGKV5-2	P06315	115 aa		20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	RAPGEF4	Q8WZA2	1011 aa		20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	RBSN	Q9H1K0	784 aa		20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	BICC1	Q9H694	974 aa	Known RBP	20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	WDR33	Q9C0J8	1336 aa	Known RBP	20.44	■□□□□ 0.86
TOM1-210	ENST00000449058	SASH1	O94885	1247 aa		20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	PRIM1	P49642	420 aa	Known RBP	20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	KCNB2	Q92953	911 aa		20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	EVI5L	Q96CN4	794 aa		20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	AK2	P54819	239 aa		20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	AACS	Q86V21	672 aa		20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	ANP32B	Q92688	251 aa	Known RBP	20.43	■□□□□ 0.86
TOM1-210	ENST00000449058	RPAP1	Q9BWH6	1393 aa	Predicted RBP	20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	PHKG2	P15735	406 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	AIMP1	Q12904	312 aa	Known RBP	20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	LARP1	Q6PKG0	1096 aa	Known RBP	20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	RUFY3	Q7L099	469 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	LIMCH1	Q9UPQ0	1083 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	MRC1	P22897	1456 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	MEGF6	O75095	1541 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	SLC39A6	Q13433	755 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	LRSAM1	Q6UWE0	723 aa		20.42	■□□□□ 0.86
TOM1-210	ENST00000449058	PTH1R	Q03431	593 aa		20.41	■□□□□ 0.86
TOM1-210	ENST00000449058	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	20.41	■□□□□ 0.86
TOM1-210	ENST00000449058	PLEKHG2	Q9H7P9	1386 aa		20.41	■□□□□ 0.86
TOM1-210	ENST00000449058	EAF2	Q96CJ1	260 aa	Predicted RBP	20.41	■□□□□ 0.86
TOM1-210	ENST00000449058	NLRP2	Q9NX02	1062 aa		20.41	■□□□□ 0.86
TOM1-210	ENST00000449058	TAT	P17735	454 aa	Predicted RBP	20.4	■□□□□ 0.86
TOM1-210	ENST00000449058	G3BP1	Q13283	466 aa	Known RBP eCLIP	20.4	■□□□□ 0.86	1e-6	■■■□□ 16.4
TOM1-210	ENST00000449058	RIC3	Q7Z5B4	369 aa		20.4	■□□□□ 0.86
TOM1-210	ENST00000449058	TM6SF1	Q9BZW5	370 aa		20.4	■□□□□ 0.86
TOM1-210	ENST00000449058	TCHH	Q07283	1943 aa		20.4	■□□□□ 0.86
TOM1-210	ENST00000449058	PKD1L3	Q7Z443	1732 aa		20.4	■□□□□ 0.86
TOM1-210	ENST00000449058	NEURL1B	A8MQ27	555 aa		20.39	■□□□□ 0.86
TOM1-210	ENST00000449058	NFATC2IP	Q8NCF5	419 aa		20.39	■□□□□ 0.85
TOM1-210	ENST00000449058	CAST	P20810	708 aa	Known RBP	20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	SNRK	Q9NRH2	765 aa		20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	SYCE3	A1L190	88 aa		20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	NEXN	Q0ZGT2	675 aa		20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	GCKR	Q14397	625 aa		20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	XAGE3	Q8WTP9	111 aa		20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	METTL22	Q9BUU2	404 aa	Predicted RBP	20.38	■□□□□ 0.85
TOM1-210	ENST00000449058	CCDC171	Q6TFL3	1326 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	HIP1	O00291	1037 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	NECTIN1	Q15223	517 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	VPS53	Q5VIR6	699 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	LRP10	Q7Z4F1	713 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	PDLIM2	Q96JY6	352 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	ZSWIM6	Q9HCJ5	1215 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	MYL6B	P14649	208 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	IFNL2	Q8IZJ0	200 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	TMEM87A	Q8NBN3	555 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	ZNF496	Q96IT1	587 aa	Predicted RBP	20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	DCC	P43146	1447 aa		20.37	■□□□□ 0.85
TOM1-210	ENST00000449058	CPA1	P15085	419 aa		20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	ADCK5	Q3MIX3	580 aa		20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	PRPF40B	Q6NWY9	871 aa	Known RBP	20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	COPS6	Q7L5N1	327 aa		20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	AFDN	P55196	1824 aa	Known RBP	20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	ZSCAN22	P10073	491 aa	Predicted RBP	20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	CCDC8	Q9H0W5	538 aa	Predicted RBP	20.36	■□□□□ 0.85
TOM1-210	ENST00000449058	STRCP1	A6NGW2	1772 aa		20.35	■□□□□ 0.85
TOM1-210	ENST00000449058	JAKMIP1	Q96N16	626 aa	Known RBP	20.35	■□□□□ 0.85

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