RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 C1orf141Q5JVX7 400 aa19.85■□□□□ 0.77
CLCNKA-203ENST00000439316 HOXB7P09629 217 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 TATP17735 454 aaPredicted RBP19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 MPRIPQ6WCQ1 1025 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 NUTM1Q86Y26 1132 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 RHPN1Q8TCX5 695 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 SYCE3A1L190 88 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 SURF6O75683 361 aaKnown RBP19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 TOM1L2Q6ZVM7 507 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 UPF3BQ9BZI7 483 aaKnown RBP19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 COL16A1Q07092 1604 aaPredicted RBP19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 COL22A1Q8NFW1 1626 aaPredicted RBP19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 RAD50Q92878 1312 aa19.84■□□□□ 0.77
CLCNKA-203ENST00000439316 UBAP1LF5GYI3 381 aa19.83■□□□□ 0.77
CLCNKA-203ENST00000439316 NOL8Q76FK4 1167 aaKnown RBP19.83■□□□□ 0.77
CLCNKA-203ENST00000439316 STRN4Q9NRL3 753 aa19.83■□□□□ 0.77
CLCNKA-203ENST00000439316 SGSM2O43147 1006 aa19.83■□□□□ 0.76
CLCNKA-203ENST00000439316 EIF4A1P60842 406 aaKnown RBP19.83■□□□□ 0.76
CLCNKA-203ENST00000439316 KIF1BPQ96EK5 621 aa19.83■□□□□ 0.76
CLCNKA-203ENST00000439316 MSNP26038 577 aaKnown RBP19.82■□□□□ 0.76
CLCNKA-203ENST00000439316 EVA1CP58658 441 aa19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 BEND3Q5T5X7 828 aa19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 USP42Q9H9J4 1324 aaKnown RBP19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 SRGAP3O43295 1099 aa19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 TPM2P07951 284 aa19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 UBE2Q2Q8WVN8 375 aa19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 NOL7Q9UMY1 257 aaKnown RBP19.81■□□□□ 0.76
CLCNKA-203ENST00000439316 WDR33Q9C0J8 1336 aaKnown RBP19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 RNMTO43148 476 aaKnown RBP19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 OFD1O75665 1012 aa19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 NBPF7P0C2Y1 421 aaPredicted RBP19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 LARP1Q6PKG0 1096 aaKnown RBP19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 DNAAF4Q8WXU2 420 aa19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 SPG7Q9UQ90 795 aa19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 RPAP1Q9BWH6 1393 aaPredicted RBP19.8■□□□□ 0.76
CLCNKA-203ENST00000439316 CHMP4AQ9BY43 222 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 LSG1Q9H089 658 aaKnown RBP19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 BTG4Q9NY30 223 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 CHPF2Q9P2E5 772 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 TEFQ10587 303 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 CNTROBQ8N137 903 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 TTC14Q96N46 770 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 SNX14Q9Y5W7 946 aa19.79■□□□□ 0.76
CLCNKA-203ENST00000439316 MAP4K4O95819 1239 aaPredicted RBP19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 EIF2S2P20042 333 aaKnown RBP19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 HSP90AB4PQ58FF6 505 aa19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 SYAP1Q96A49 352 aaPredicted RBP19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 CARD10Q9BWT7 1032 aa19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 ADCY9O60503 1353 aa19.78■□□□□ 0.76
CLCNKA-203ENST00000439316 PKD1L3Q7Z443 1732 aa19.77■□□□□ 0.76
CLCNKA-203ENST00000439316 COL14A1Q05707 1796 aaKnown RBP19.77■□□□□ 0.76
CLCNKA-203ENST00000439316 PI4KAP2A4QPH2 592 aa19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 ZNF500O60304 480 aaPredicted RBP19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 PI4KAP1Q8N8J0 262 aa19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 TMEM87AQ8NBN3 555 aa19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 TTC41PQ6P2S7 1318 aa19.77■□□□□ 0.75
CLCNKA-203ENST00000439316 PHKG2P15735 406 aa19.76■□□□□ 0.75
CLCNKA-203ENST00000439316 MTX1Q13505 466 aa19.76■□□□□ 0.75
CLCNKA-203ENST00000439316 PLEKHG2Q9H7P9 1386 aa19.76■□□□□ 0.75
CLCNKA-203ENST00000439316 OVOS2A0A0G2JMS6 1433 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 IFNL2Q8IZJ0 200 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 TSPY26PQ9H489 355 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 PARP4Q9UKK3 1724 aaKnown RBP19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 ADAMTS7Q9UKP4 1686 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 CYP27B1O15528 508 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 RRP9O43818 475 aaKnown RBP19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 KIAA1211Q6ZU35 1233 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 SCN11AQ9UI33 1791 aa19.75■□□□□ 0.75
CLCNKA-203ENST00000439316 BTBD11A6QL63 1104 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 KCNQ3O43525 872 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 ADAMTS2O95450 1211 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 RASEFQ8IZ41 740 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 ZKSCAN5Q9Y2L8 839 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 GADD45BO75293 160 aaPredicted RBP19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 GLRX3O76003 335 aaKnown RBP19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 PHF14O94880 888 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 MCM5P33992 734 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 AK2P54819 239 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 USP48Q86UV5 1035 aa19.74■□□□□ 0.75
CLCNKA-203ENST00000439316 SIPA1L3O60292 1781 aaPredicted RBP19.73■□□□□ 0.75
CLCNKA-203ENST00000439316 TERF1P54274 439 aa19.73■□□□□ 0.75
CLCNKA-203ENST00000439316 CCDC39Q9UFE4 941 aa19.73■□□□□ 0.75
CLCNKA-203ENST00000439316 KDM6AO15550 1401 aaPredicted RBP19.73■□□□□ 0.75
CLCNKA-203ENST00000439316 IL2RBP14784 551 aa19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 RUFY3Q7L099 469 aa19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 GDPD2Q9HCC8 539 aa19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 LIMCH1Q9UPQ0 1083 aa19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 NUTM2BA6NNL0 878 aaPredicted RBP19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 NUTM2EB1AL46 878 aaPredicted RBP19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 NUTM2AQ8IVF1 878 aaPredicted RBP19.72■□□□□ 0.75
CLCNKA-203ENST00000439316 ALDH1L1O75891 902 aa19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 ZSCAN22P10073 491 aaPredicted RBP19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 CWC27Q6UX04 472 aaKnown RBP19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 RNF214Q8ND24 703 aa19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 ZCRB1Q8TBF4 217 aaKnown RBP19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 CERKQ8TCT0 537 aa19.71■□□□□ 0.75
CLCNKA-203ENST00000439316 TCHHQ07283 1943 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms