RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 BRPF3Q9ULD4 1205 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 ANKRD18BA2A2Z9 1011 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 ATP2B1P20020 1258 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 NUCB1Q02818 461 aa9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 ZNF335Q9H4Z2 1342 aaPredicted RBP9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 K7ELQ4 463 aaPredicted RBP9.66□□□□□ -0.86
TMEM39A-202ENST00000438581 SKOR2Q2VWA4 1001 aaPredicted RBP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 PRPF40BQ6NWY9 871 aaKnown RBP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 CCDC34Q96HJ3 373 aa9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 AKAP2Q9Y2D5 859 aa9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 MCM2P49736 904 aa9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 ATP8B2P98198 1209 aa9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 BMP2KLQ5H9B9 411 aa9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 ZNF496Q96IT1 587 aaPredicted RBP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 DDX21Q9NR30 783 aaKnown RBP eCLIP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 BLMP54132 1417 aaPredicted RBP9.65□□□□□ -0.86
TMEM39A-202ENST00000438581 ZBTB7BO15156 539 aaPredicted RBP9.65□□□□□ -0.87
TMEM39A-202ENST00000438581 A1BGP04217 495 aa9.65□□□□□ -0.87
TMEM39A-202ENST00000438581 CEP85Q6P2H3 762 aa9.65□□□□□ -0.87
TMEM39A-202ENST00000438581 ZMYM4Q5VZL5 1548 aa9.65□□□□□ -0.87
TMEM39A-202ENST00000438581 MAP3K4Q9Y6R4 1608 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 CEP152O94986 1710 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 AK7Q96M32 723 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 LARP6Q9BRS8 491 aaKnown RBP9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 SETD1BQ9UPS6 1966 aaKnown RBP9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 PCDH11XQ9BZA7 1347 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 PCDH11YQ9BZA8 1340 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 ALDH1L1O75891 902 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 PLEKHF1Q96S99 279 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 PRDM10Q9NQV6 1147 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 SPHKAPQ2M3C7 1700 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 E9PCH4 1651 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 GOLIM4O00461 696 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 CASTP20810 708 aaKnown RBP9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 SART3Q15020 963 aaKnown RBP9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 ZNF219Q9P2Y4 722 aaPredicted RBP9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 USP6P35125 1406 aa9.64□□□□□ -0.87
TMEM39A-202ENST00000438581 SDSP20132 328 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 TDO2P48775 406 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 NACAP1Q9BZK3 213 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 BCORL1Q5H9F3 1711 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 FIBPO43427 364 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 PRIM1P49642 420 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 PDE1AP54750 535 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 CEBPZQ03701 1054 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 TTC22Q5TAA0 569 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 ARHGEF25Q86VW2 580 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 RFC4P35249 363 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 UTP14CQ5TAP6 766 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 ZSCAN25Q6NSZ9 544 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 NBPF11Q86T75 865 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 AIDAQ96BJ3 306 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 PDRG1Q9NUG6 133 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 ANKIB1Q9P2G1 1089 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 ARHGEF10O15013 1369 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 PRPF40AO75400 957 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 SAFBQ15424 915 aaKnown RBP eCLIP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 FAM98CQ17RN3 349 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 SLC52A2Q9HAB3 445 aa9.63□□□□□ -0.87
TMEM39A-202ENST00000438581 USP19O94966 1318 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 INSRP06213 1382 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 DDX46Q7L014 1031 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 DZIP3Q86Y13 1208 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 DCTPP1Q9H773 170 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 NIP7Q9Y221 180 aaKnown RBP eCLIP9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 FAM135BQ49AJ0 1406 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 KIAA0232Q92628 1395 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 EIF4A1P60842 406 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 ATP2B2Q01814 1243 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 SMC5Q8IY18 1101 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 IQSEC3Q9UPP2 1182 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 TRPM1Q7Z4N2 1603 aa9.62□□□□□ -0.87
TMEM39A-202ENST00000438581 RBM5P52756 815 aaKnown RBP eCLIP9.61□□□□□ -0.872e-6■■■■□ 22.4
TMEM39A-202ENST00000438581 SYNMO15061 1565 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 BECN2A8MW95 431 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 TRAK2O60296 914 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 MMP14P50281 582 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 KIAA2012Q0VF49 1180 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 CAVIN4Q5BKX8 364 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 NBPF5PQ86XG9 351 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 DNAJC10Q8IXB1 793 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 NUP133Q8WUM0 1156 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 DIP2CQ9Y2E4 1556 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 HELBQ8NG08 1087 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 KLHDC4Q8TBB5 520 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 FAM89AQ96GI7 184 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 USP16Q9Y5T5 823 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 ATP7BP35670 1465 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 MINDY4BA8MYZ0 360 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 NBPF7P0C2Y1 421 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 DDX11Q96FC9 970 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 TBC1D2Q9BYX2 928 aa9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 CWC22Q9HCG8 908 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-202ENST00000438581 PDCP20941 246 aa9.6□□□□□ -0.87
TMEM39A-202ENST00000438581 LARP1BQ659C4 914 aaKnown RBP9.6□□□□□ -0.87
TMEM39A-202ENST00000438581 OTUD7AQ8TE49 926 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-202ENST00000438581 SMARCC1Q92922 1105 aaPredicted RBP9.6□□□□□ -0.87
TMEM39A-202ENST00000438581 CTNNA3Q9UI47 895 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms