RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 TEX2Q8IWB9 1127 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 SCN11AQ9UI33 1791 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 CNTRLQ7Z7A1 2325 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 C16orf45Q96MC5 204 aaPredicted RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 LIMCH1Q9UPQ0 1083 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 PXDNLA1KZ92 1463 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 RIMBP3CA6NJZ7 1639 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 RIMBP3BA6NNM3 1639 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 RIMBP3Q9UFD9 1639 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 RIMS1Q86UR5 1692 aaKnown RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 HTATSF1O43719 755 aaKnown RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 BMS1Q14692 1282 aaKnown RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 GIMAP6Q6P9H5 292 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 SHROOM3Q8TF72 1996 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 ZNF165P49910 485 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 LMOD3Q0VAK6 560 aa6.11□□□□□ -1.43
RIF1-203ENST00000428287 TWISTNBQ3B726 338 aaPredicted RBP6.11□□□□□ -1.43
RIF1-203ENST00000428287 C8orf58Q8NAV2 365 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 PTGS1P23219 599 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 HNRNPH2P55795 449 aaKnown RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 RNF20Q5VTR2 975 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 CCDC186Q7Z3E2 898 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 UPF3BQ9BZI7 483 aaKnown RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 SCAND2PQ9GZW5 306 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 PLA2G4AP47712 749 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 ZNF771Q7L3S4 317 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 TERF2IPQ9NYB0 399 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 MED1Q15648 1581 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 ADCY9O60503 1353 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 SMARCA5O60264 1052 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 HMMRO75330 724 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 F13A1P00488 732 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 MAP3K11Q16584 847 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 CCDC88CQ9P219 2028 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 CEP170BQ9Y4F5 1589 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 LAMB4A4D0S4 1761 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 KDRP35968 1356 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 TTC21AQ8NDW8 1320 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 USP42Q9H9J4 1324 aaKnown RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 SLU7O95391 586 aaKnown RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 CCAR2Q8N163 923 aaKnown RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 MEIS3Q99687 375 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 TRAK1Q9UPV9 953 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 NFATC2IPQ8NCF5 419 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 SH2B1Q9NRF2 756 aaPredicted RBP6.1□□□□□ -1.43
RIF1-203ENST00000428287 MBIPQ9NS73 344 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 MRVI1Q9Y6F6 885 aa6.1□□□□□ -1.43
RIF1-203ENST00000428287 PSDA5PKW4 1024 aaPredicted RBP6.09□□□□□ -1.43
RIF1-203ENST00000428287 TADA3O75528 432 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 ZNF75DP51815 510 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 EXOC4Q96A65 974 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 C1orf115Q9H7X2 142 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 MAP3K5Q99683 1374 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 TTC21BQ7Z4L5 1316 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 ETF1P62495 437 aaKnown RBP6.09□□□□□ -1.43
RIF1-203ENST00000428287 DDX19AQ9NUU7 478 aaKnown RBP6.09□□□□□ -1.43
RIF1-203ENST00000428287 NWD2Q9ULI1 1742 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 TOPAZ1Q8N9V7 1692 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 MCCP23508 829 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 PRKAR2BP31323 418 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 SWT1Q5T5J6 900 aaKnown RBP6.09□□□□□ -1.43
RIF1-203ENST00000428287 CCDC151A5D8V7 595 aa6.09□□□□□ -1.43
RIF1-203ENST00000428287 DHX8Q14562 1220 aaKnown RBP6.09□□□□□ -1.43
RIF1-203ENST00000428287 TSGA10IPQ3SY00 556 aa6.09□□□□□ -1.44
RIF1-203ENST00000428287 HYPKQ9NX55 129 aa6.09□□□□□ -1.44
RIF1-203ENST00000428287 KRT85P78386 507 aa6.09□□□□□ -1.44
RIF1-203ENST00000428287 PTPN14Q15678 1187 aa6.09□□□□□ -1.44
RIF1-203ENST00000428287 IMPACTQ9P2X3 320 aa6.09□□□□□ -1.44
RIF1-203ENST00000428287 PRAM1Q96QH2 718 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 ARID3AQ99856 593 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 CDK11BP21127 795 aaKnown RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 VPS53Q5VIR6 699 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 ALDH8A1Q9H2A2 487 aaPredicted RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 CNPY2Q9Y2B0 182 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 PEAK1Q9H792 1746 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 NEDD4P46934 1319 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 U2SURPO15042 1029 aaKnown RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 SSH3Q8TE77 659 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 NCAPGQ9BPX3 1015 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 PHRF1Q9P1Y6 1649 aaKnown RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 NRXN3Q9Y4C0 1643 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 VGLL3A8MV65 326 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 IL13P35225 146 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 E4F1Q66K89 784 aaPredicted RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 RUFY3Q7L099 469 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 CBX8Q9HC52 389 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 ZSWIM6Q9HCJ5 1215 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 NRBP1Q9UHY1 535 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 EDC4Q6P2E9 1401 aaKnown RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 CDK5RAP2Q96SN8 1893 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 LIG1P18858 919 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 CCZ1BP86790 482 aa6.08□□□□□ -1.44
RIF1-203ENST00000428287 CCZ1P86791 482 aaPredicted RBP6.08□□□□□ -1.44
RIF1-203ENST00000428287 CENPFP49454 3210 aa6.07□□□□□ -1.44
RIF1-203ENST00000428287 SRRTQ9BXP5 876 aaKnown RBP6.07□□□□□ -1.44
RIF1-203ENST00000428287 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.07□□□□□ -1.44
RIF1-203ENST00000428287 SOX12O15370 315 aa6.07□□□□□ -1.44
RIF1-203ENST00000428287 BRMS1Q9HCU9 246 aa6.07□□□□□ -1.44
RIF1-203ENST00000428287 KIF13BQ9NQT8 1826 aa6.07□□□□□ -1.44
RIF1-203ENST00000428287 DNM1Q05193 864 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms