RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 NBPF5PQ86XG9 351 aaPredicted RBP28.07■■■□□ 2.08
PTPN4-202ENST00000420482 KDM2BQ8NHM5 1336 aa28.07■■■□□ 2.08
PTPN4-202ENST00000420482 RIPK4P57078 832 aa28.06■■■□□ 2.08
PTPN4-202ENST00000420482 TIAM2Q8IVF5 1701 aa28.06■■■□□ 2.08
PTPN4-202ENST00000420482 NBPF26B4DH59 902 aa28.05■■■□□ 2.08
PTPN4-202ENST00000420482 EIF4A1P60842 406 aaKnown RBP28.05■■■□□ 2.08
PTPN4-202ENST00000420482 NBPF10Q6P3W6 841 aaKnown RBP28.05■■■□□ 2.08
PTPN4-202ENST00000420482 NBPF15Q8N660 670 aa28.05■■■□□ 2.08
PTPN4-202ENST00000420482 ZC3H4Q9UPT8 1303 aaKnown RBP28.05■■■□□ 2.08
PTPN4-202ENST00000420482 LMNB1P20700 586 aa28.04■■■□□ 2.08
PTPN4-202ENST00000420482 WDR43Q15061 677 aaKnown RBP eCLIP28.04■■■□□ 2.08
PTPN4-202ENST00000420482 TPTE2Q6XPS3 522 aa28.04■■■□□ 2.08
PTPN4-202ENST00000420482 RBM46Q8TBY0 533 aaKnown RBP28.04■■■□□ 2.08
PTPN4-202ENST00000420482 THUMPD2Q9BTF0 503 aaKnown RBP28.04■■■□□ 2.08
PTPN4-202ENST00000420482 CNKSR1Q969H4 720 aa28.03■■■□□ 2.08
PTPN4-202ENST00000420482 TSPYL4Q9UJ04 414 aa28.03■■■□□ 2.08
PTPN4-202ENST00000420482 NIP7Q9Y221 180 aaKnown RBP eCLIP28.03■■■□□ 2.08
PTPN4-202ENST00000420482 C16orf71Q8IYS4 520 aaPredicted RBP28.02■■■□□ 2.08
PTPN4-202ENST00000420482 CCDC24Q8N4L8 307 aa28.02■■■□□ 2.08
PTPN4-202ENST00000420482 BABAM1Q9NWV8 329 aa28.02■■■□□ 2.08
PTPN4-202ENST00000420482 COL11A2P13942 1736 aaPredicted RBP28.01■■■□□ 2.07
PTPN4-202ENST00000420482 STYK1Q6J9G0 422 aa28.01■■■□□ 2.07
PTPN4-202ENST00000420482 KIF6Q6ZMV9 814 aa28.01■■■□□ 2.07
PTPN4-202ENST00000420482 TMPOP42166 694 aaKnown RBP28■■■□□ 2.07
PTPN4-202ENST00000420482 RASSF7Q02833 373 aa28■■■□□ 2.07
PTPN4-202ENST00000420482 MASTLQ96GX5 879 aa28■■■□□ 2.07
PTPN4-202ENST00000420482 ERBB4Q15303 1308 aa27.99■■■□□ 2.07
PTPN4-202ENST00000420482 DICER1Q9UPY3 1922 aaKnown RBP27.99■■■□□ 2.07
PTPN4-202ENST00000420482 GTF2E1P29083 439 aaPredicted RBP27.99■■■□□ 2.07
PTPN4-202ENST00000420482 SOGA3Q5TF21 947 aa27.99■■■□□ 2.07
PTPN4-202ENST00000420482 RRP7AQ9Y3A4 280 aaKnown RBP27.99■■■□□ 2.07
PTPN4-202ENST00000420482 ERVV-1B6SEH8 477 aa27.98■■■□□ 2.07
PTPN4-202ENST00000420482 SRGNP10124 158 aa27.98■■■□□ 2.07
PTPN4-202ENST00000420482 NGEFQ8N5V2 710 aa27.98■■■□□ 2.07
PTPN4-202ENST00000420482 C21orf2O43822 256 aa27.97■■■□□ 2.07
PTPN4-202ENST00000420482 DNAJC5GQ8N7S2 189 aa27.97■■■□□ 2.07
PTPN4-202ENST00000420482 FER1L6Q2WGJ9 1857 aa27.97■■■□□ 2.07
PTPN4-202ENST00000420482 CACNA1SQ13698 1873 aa27.96■■■□□ 2.07
PTPN4-202ENST00000420482 FSTL1Q12841 308 aa27.96■■■□□ 2.07
PTPN4-202ENST00000420482 RUNDC1Q96C34 613 aa27.96■■■□□ 2.07
PTPN4-202ENST00000420482 NYXQ9GZU5 481 aa27.96■■■□□ 2.07
PTPN4-202ENST00000420482 MYL6BP14649 208 aa27.95■■■□□ 2.06
PTPN4-202ENST00000420482 ARFGEF2Q9Y6D5 1785 aa27.95■■■□□ 2.06
PTPN4-202ENST00000420482 MAP3K15Q6ZN16 1313 aa27.94■■■□□ 2.06
PTPN4-202ENST00000420482 NPR1P16066 1061 aa27.94■■■□□ 2.06
PTPN4-202ENST00000420482 NEUROD2Q15784 382 aa27.94■■■□□ 2.06
PTPN4-202ENST00000420482 HLFQ16534 295 aa27.94■■■□□ 2.06
PTPN4-202ENST00000420482 ZNF219Q9P2Y4 722 aaPredicted RBP27.94■■■□□ 2.06
PTPN4-202ENST00000420482 FAM177BA6PVY3 158 aa27.93■■■□□ 2.06
PTPN4-202ENST00000420482 PRPF40BQ6NWY9 871 aaKnown RBP27.93■■■□□ 2.06
PTPN4-202ENST00000420482 CCDC146Q8IYE0 955 aa27.93■■■□□ 2.06
PTPN4-202ENST00000420482 RRAGCQ9HB90 399 aa27.93■■■□□ 2.06
PTPN4-202ENST00000420482 NFKBIEO00221 500 aa27.92■■■□□ 2.06
PTPN4-202ENST00000420482 PRKRIP1Q9H875 184 aaPredicted RBP27.92■■■□□ 2.06
PTPN4-202ENST00000420482 PRELPP51888 382 aa27.91■■■□□ 2.06
PTPN4-202ENST00000420482 TAOK3Q9H2K8 898 aa27.91■■■□□ 2.06
PTPN4-202ENST00000420482 LTBP3Q9NS15 1303 aa27.91■■■□□ 2.06
PTPN4-202ENST00000420482 DPY19L2Q6NUT2 758 aa27.9■■■□□ 2.06
PTPN4-202ENST00000420482 KLRG2A4D1S0 409 aaPredicted RBP27.89■■■□□ 2.06
PTPN4-202ENST00000420482 GLTPD2A6NH11 291 aa27.89■■■□□ 2.06
PTPN4-202ENST00000420482 EIF2S2P20042 333 aaKnown RBP27.89■■■□□ 2.06
PTPN4-202ENST00000420482 ALDH1B1P30837 517 aa27.89■■■□□ 2.06
PTPN4-202ENST00000420482 ERFEQ4G0M1 354 aa27.88■■■□□ 2.05
PTPN4-202ENST00000420482 TTLL7Q6ZT98 887 aa27.88■■■□□ 2.05
PTPN4-202ENST00000420482 ZBTB3Q9H5J0 574 aa27.88■■■□□ 2.05
PTPN4-202ENST00000420482 ADAMTS8Q9UP79 889 aa27.88■■■□□ 2.05
PTPN4-202ENST00000420482 NUP98P52948 1817 aa27.87■■■□□ 2.05
PTPN4-202ENST00000420482 IBTKQ9P2D0 1353 aaPredicted RBP27.86■■■□□ 2.05
PTPN4-202ENST00000420482 SLX4Q8IY92 1834 aa27.86■■■□□ 2.05
PTPN4-202ENST00000420482 ZEB1P37275 1124 aaPredicted RBP27.86■■■□□ 2.05
PTPN4-202ENST00000420482 CCDC93Q567U6 631 aa27.86■■■□□ 2.05
PTPN4-202ENST00000420482 VEGFAP15692 232 aaPredicted RBP27.85■■■□□ 2.05
PTPN4-202ENST00000420482 GIGYF2Q6Y7W6 1299 aaKnown RBP27.85■■■□□ 2.05
PTPN4-202ENST00000420482 SMC1BQ8NDV3 1235 aa27.85■■■□□ 2.05
PTPN4-202ENST00000420482 LAS1LQ9Y4W2 734 aaKnown RBP27.85■■■□□ 2.05
PTPN4-202ENST00000420482 PPP1R42Q7Z4L9 355 aa27.84■■■□□ 2.05
PTPN4-202ENST00000420482 KLRG1Q96E93 195 aa27.84■■■□□ 2.05
PTPN4-202ENST00000420482 CHL1O00533 1208 aa27.83■■■□□ 2.05
PTPN4-202ENST00000420482 GPTP24298 496 aa27.83■■■□□ 2.05
PTPN4-202ENST00000420482 HTRA3P83110 453 aa27.83■■■□□ 2.05
PTPN4-202ENST00000420482 PARP10Q53GL7 1025 aa27.83■■■□□ 2.05
PTPN4-202ENST00000420482 RTKN2Q8IZC4 609 aa27.82■■■□□ 2.04
PTPN4-202ENST00000420482 TRIM35Q9UPQ4 493 aa27.82■■■□□ 2.04
PTPN4-202ENST00000420482 NUTM1Q86Y26 1132 aa27.81■■■□□ 2.04
PTPN4-202ENST00000420482 ZNF34Q8IZ26 560 aa27.81■■■□□ 2.04
PTPN4-202ENST00000420482 RPGRQ92834 1020 aaKnown RBP27.81■■■□□ 2.04
PTPN4-202ENST00000420482 HSP90AB3PQ58FF7 597 aa27.8■■■□□ 2.04
PTPN4-202ENST00000420482 JMYQ8N9B5 988 aa27.8■■■□□ 2.04
PTPN4-202ENST00000420482 RIC1Q4ADV7 1423 aa27.8■■■□□ 2.04
PTPN4-202ENST00000420482 CALD1Q05682 793 aaKnown RBP27.79■■■□□ 2.04
PTPN4-202ENST00000420482 PDIA6Q15084 440 aa27.79■■■□□ 2.04
PTPN4-202ENST00000420482 CRY2Q49AN0 593 aa27.79■■■□□ 2.04
PTPN4-202ENST00000420482 C7orf43Q8WVR3 580 aa27.79■■■□□ 2.04
PTPN4-202ENST00000420482 UBN2Q6ZU65 1347 aa27.78■■■□□ 2.04
PTPN4-202ENST00000420482 HOXB7P09629 217 aa27.78■■■□□ 2.04
PTPN4-202ENST00000420482 FKBP4Q02790 459 aaKnown RBP eCLIP27.78■■■□□ 2.04
PTPN4-202ENST00000420482 SUSD4Q5VX71 490 aa27.78■■■□□ 2.04
PTPN4-202ENST00000420482 NECTIN2Q92692 538 aa27.78■■■□□ 2.04
PTPN4-202ENST00000420482 ABCC12Q96J65 1359 aa27.77■■■□□ 2.04
PTPN4-202ENST00000420482 CFAP44Q96MT7 982 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms