RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 MMRN1Q13201 1228 aa9.76□□□□□ -0.85
HMGN1-205ENST00000419378 QTRT2Q9H974 415 aaKnown RBP9.76□□□□□ -0.85
HMGN1-205ENST00000419378 CABP1Q9NZU7 370 aa9.76□□□□□ -0.85
HMGN1-205ENST00000419378 NWD2Q9ULI1 1742 aa9.76□□□□□ -0.85
HMGN1-205ENST00000419378 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 DESI1Q6ICB0 168 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 CCER1Q8TC90 406 aaPredicted RBP9.75□□□□□ -0.85
HMGN1-205ENST00000419378 EPS8L1Q8TE68 723 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 TRPC5Q9UL62 973 aaPredicted RBP9.75□□□□□ -0.85
HMGN1-205ENST00000419378 AKAP12Q02952 1782 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 NRKQ7Z2Y5 1582 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 EP400Q96L91 3159 aa9.75□□□□□ -0.85
HMGN1-205ENST00000419378 BRD4O60885 1362 aaPredicted RBP9.75□□□□□ -0.85
HMGN1-205ENST00000419378 NRAPQ86VF7 1730 aa9.74□□□□□ -0.85
HMGN1-205ENST00000419378 COL14A1Q05707 1796 aaKnown RBP9.74□□□□□ -0.85
HMGN1-205ENST00000419378 NUTM2GQ5VZR2 741 aa9.74□□□□□ -0.85
HMGN1-205ENST00000419378 NYAP1Q6ZVC0 841 aa9.74□□□□□ -0.85
HMGN1-205ENST00000419378 NDUFB9Q9Y6M9 179 aa9.74□□□□□ -0.85
HMGN1-205ENST00000419378 USP47Q96K76 1375 aa9.74□□□□□ -0.85
HMGN1-205ENST00000419378 SSH2Q76I76 1423 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 ST20-MTHFSA0A0A6YYL1 179 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 LYPD8Q6UX82 237 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 UNC5CLQ8IV45 518 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 TESK2Q96S53 571 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 ZNF330Q9Y3S2 320 aaPredicted RBP9.73□□□□□ -0.85
HMGN1-205ENST00000419378 PIK3C2AO00443 1686 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 MON2Q7Z3U7 1717 aa9.73□□□□□ -0.85
HMGN1-205ENST00000419378 GLI3P10071 1580 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 FAM83GA6ND36 823 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 NR6A1Q15406 480 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 ABTB2Q8N961 1025 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 SPSB2Q99619 263 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 MTRQ99707 1265 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 ARID3AQ99856 593 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 USP19O94966 1318 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 CPSF1Q10570 1443 aaKnown RBP9.72□□□□□ -0.85
HMGN1-205ENST00000419378 CD163L1Q9NR16 1453 aa9.72□□□□□ -0.85
HMGN1-205ENST00000419378 TLL1O43897 1013 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 GPR37L1O60883 481 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 WWC1Q8IX03 1113 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 FAM160A2Q8N612 972 aaPredicted RBP9.71□□□□□ -0.86
HMGN1-205ENST00000419378 PRDM11Q9NQV5 511 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 KIAA0232Q92628 1395 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 SLIT3O75094 1523 aa9.71□□□□□ -0.86
HMGN1-205ENST00000419378 ZPR1O75312 459 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 JUNDP17535 347 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 IRF5Q13568 498 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 VPS72Q15906 364 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 NLRP13Q86W25 1043 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 BTG4Q9NY30 223 aa9.7□□□□□ -0.86
HMGN1-205ENST00000419378 KTN1Q86UP2 1357 aaKnown RBP9.7□□□□□ -0.86
HMGN1-205ENST00000419378 CPDO75976 1380 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 MSS51Q4VC12 460 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 TTC21BQ7Z4L5 1316 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 TMC1Q8TDI8 760 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 ZNF516Q92618 1163 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 PUS7Q96PZ0 661 aaKnown RBP9.69□□□□□ -0.86
HMGN1-205ENST00000419378 PRDM9Q9NQV7 894 aa9.69□□□□□ -0.86
HMGN1-205ENST00000419378 LMO7Q8WWI1 1683 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 A0A1W2PP64 1363 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 NINLQ9Y2I6 1382 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 TTC21AQ8NDW8 1320 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 ZC3H6P61129 1189 aaKnown RBP9.68□□□□□ -0.86
HMGN1-205ENST00000419378 CHRNA2Q15822 529 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 TJAP1Q5JTD0 557 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 SLC12A5Q9H2X9 1139 aa9.68□□□□□ -0.86
HMGN1-205ENST00000419378 USP54Q70EL1 1684 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 POM121CA8CG34 1229 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 DXOO77932 396 aaKnown RBP9.67□□□□□ -0.86
HMGN1-205ENST00000419378 ADH1BP00325 375 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 GCP02774 474 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 PTPRNQ16849 979 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 CCDC82Q8N4S0 544 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 IL21Q9HBE4 155 aa9.67□□□□□ -0.86
HMGN1-205ENST00000419378 CCDC9Q9Y3X0 531 aaKnown RBP9.67□□□□□ -0.86
HMGN1-205ENST00000419378 EDC4Q6P2E9 1401 aaKnown RBP9.66□□□□□ -0.86
HMGN1-205ENST00000419378 TMF1P82094 1093 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 HDGFL2Q7Z4V5 671 aaPredicted RBP9.66□□□□□ -0.86
HMGN1-205ENST00000419378 ARXQ96QS3 562 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 TERF2IPQ9NYB0 399 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 MAP10Q9P2G4 905 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 CAMTA1Q9Y6Y1 1673 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 NFAT5O94916 1531 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 BRWD3Q6RI45 1802 aa9.66□□□□□ -0.86
HMGN1-205ENST00000419378 SPATA31A5Q5VU36 1347 aa9.65□□□□□ -0.86
HMGN1-205ENST00000419378 SPATA31A7Q8IWB4 1347 aa9.65□□□□□ -0.86
HMGN1-205ENST00000419378 F12P00748 615 aaPredicted RBP9.65□□□□□ -0.86
HMGN1-205ENST00000419378 MMP16P51512 607 aa9.65□□□□□ -0.86
HMGN1-205ENST00000419378 NME9Q86XW9 330 aa9.65□□□□□ -0.86
HMGN1-205ENST00000419378 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.65□□□□□ -0.86
HMGN1-205ENST00000419378 MYOM1P52179 1685 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 THSD7AQ9UPZ6 1657 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 AATKQ6ZMQ8 1374 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 USP31Q70CQ4 1352 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 CTHP32929 405 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 SEPT12Q8IYM1 358 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 STRN4Q9NRL3 753 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 COL18A1P39060 1754 aa9.64□□□□□ -0.87
HMGN1-205ENST00000419378 COL5A2P05997 1499 aaPredicted RBP9.64□□□□□ -0.87
HMGN1-205ENST00000419378 OVOS2A0A0J9YW53 1432 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms