RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	DMRTA1	Q5VZB9	504 aa		12.36	□□□□□ -0.43
NIF3L1-206	ENST00000416651	RAPGEF4	Q8WZA2	1011 aa		12.36	□□□□□ -0.43
NIF3L1-206	ENST00000416651	ARHGEF1	Q92888	912 aa	Known RBP	12.36	□□□□□ -0.43
NIF3L1-206	ENST00000416651	TMF1	P82094	1093 aa		12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	DDR1	Q08345	913 aa		12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	SMARCC1	Q92922	1105 aa	Predicted RBP	12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	PCDH11X	Q9BZA7	1347 aa		12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	PCDH11Y	Q9BZA8	1340 aa		12.35	□□□□□ -0.43
NIF3L1-206	ENST00000416651	PTCD2	Q8WV60	388 aa	Known RBP	12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	SIN3A	Q96ST3	1273 aa		12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	ATG3	Q9NT62	314 aa		12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	CCDC87	Q9NVE4	849 aa		12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	PIM2	Q9P1W9	311 aa		12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	SRP68	Q9UHB9	627 aa	Known RBP	12.34	□□□□□ -0.43
NIF3L1-206	ENST00000416651	ROCK2	O75116	1388 aa	Known RBP	12.33	□□□□□ -0.44
NIF3L1-206	ENST00000416651	DALRD3	Q5D0E6	543 aa	Known RBP	12.33	□□□□□ -0.44
NIF3L1-206	ENST00000416651	TRAPPC3L	Q5T215	181 aa		12.33	□□□□□ -0.44
NIF3L1-206	ENST00000416651	NLGN1	Q8N2Q7	840 aa		12.32	□□□□□ -0.44
NIF3L1-206	ENST00000416651	COG3	Q96JB2	828 aa		12.32	□□□□□ -0.44
NIF3L1-206	ENST00000416651	PARP3	Q9Y6F1	533 aa		12.32	□□□□□ -0.44
NIF3L1-206	ENST00000416651	MYH14	Q7Z406	1995 aa	Known RBP	12.32	□□□□□ -0.44
NIF3L1-206	ENST00000416651	CCDC88A	Q3V6T2	1871 aa		12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	GLTPD2	A6NH11	291 aa		12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	VEGFA	P15692	232 aa	Predicted RBP	12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	LBX1	P52954	281 aa		12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	KCTD12	Q96CX2	325 aa	Known RBP	12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	ABHD8	Q96I13	439 aa		12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	GGNBP2	Q9H3C7	697 aa		12.31	□□□□□ -0.44
NIF3L1-206	ENST00000416651	KDM6A	O15550	1401 aa	Predicted RBP	12.3	□□□□□ -0.44
NIF3L1-206	ENST00000416651	NKX1-1	Q15270	411 aa	Predicted RBP	12.3	□□□□□ -0.44
NIF3L1-206	ENST00000416651	RTCB	Q9Y3I0	505 aa	Known RBP	12.3	□□□□□ -0.44
NIF3L1-206	ENST00000416651	CGNL1	Q0VF96	1302 aa		12.3	□□□□□ -0.44
NIF3L1-206	ENST00000416651	KDR	P35968	1356 aa		12.3	□□□□□ -0.44
NIF3L1-206	ENST00000416651	PPP4R3B	Q5MIZ7	849 aa		12.29	□□□□□ -0.44
NIF3L1-206	ENST00000416651	TMOD3	Q9NYL9	352 aa		12.29	□□□□□ -0.44
NIF3L1-206	ENST00000416651	VEGFB	P49765	207 aa		12.28	□□□□□ -0.44
NIF3L1-206	ENST00000416651	PLPP6	Q8IY26	295 aa		12.28	□□□□□ -0.44
NIF3L1-206	ENST00000416651	PRDM10	Q9NQV6	1147 aa		12.28	□□□□□ -0.44
NIF3L1-206	ENST00000416651	TERF2IP	Q9NYB0	399 aa		12.28	□□□□□ -0.44
NIF3L1-206	ENST00000416651	TIAM2	Q8IVF5	1701 aa		12.28	□□□□□ -0.44
NIF3L1-206	ENST00000416651	NFKBIE	O00221	500 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	FYB1	O15117	783 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	RFC4	P35249	363 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	FOXK1	P85037	733 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	EMILIN1	Q9Y6C2	1016 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	COL5A3	P25940	1745 aa	Predicted RBP	12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	RTL1	A6NKG5	1358 aa		12.27	□□□□□ -0.45
NIF3L1-206	ENST00000416651	RPS6KA4	O75676	772 aa		12.26	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CNTNAP1	P78357	1384 aa		12.26	□□□□□ -0.45
NIF3L1-206	ENST00000416651	POLRMT	O00411	1230 aa	Known RBP	12.25	□□□□□ -0.45
NIF3L1-206	ENST00000416651	HSPA8	P11142	646 aa	Known RBP	12.25	□□□□□ -0.45
NIF3L1-206	ENST00000416651	LMNB1	P20700	586 aa		12.25	□□□□□ -0.45
NIF3L1-206	ENST00000416651	INSR	P06213	1382 aa		12.25	□□□□□ -0.45
NIF3L1-206	ENST00000416651	TBC1D12	O60347	775 aa		12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	PHKG2	P15735	406 aa		12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	TM4SF1	P30408	202 aa		12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CTCF	P49711	727 aa	Predicted RBP	12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	NEUROD1	Q13562	356 aa		12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	VIRMA	Q69YN4	1812 aa	Known RBP	12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	WBP1L	Q9NX94	342 aa		12.24	□□□□□ -0.45
NIF3L1-206	ENST00000416651	ADAMTS7	Q9UKP4	1686 aa		12.23	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CCDC85C	A6NKD9	419 aa		12.23	□□□□□ -0.45
NIF3L1-206	ENST00000416651	RC3H1	Q5TC82	1133 aa	Known RBP	12.23	□□□□□ -0.45
NIF3L1-206	ENST00000416651	RYDEN	Q9NUL5	291 aa	Known RBP	12.23	□□□□□ -0.45
NIF3L1-206	ENST00000416651	NCAPD2	Q15021	1401 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	SMG6	Q86US8	1419 aa	Known RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CARMIL3	Q8ND23	1372 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	PASK	Q96RG2	1323 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CNTNAP4	Q9C0A0	1308 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	USP42	Q9H9J4	1324 aa	Known RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	DDN	O94850	711 aa	Predicted RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	MLLT1	Q03111	559 aa	Predicted RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	KCNK17	Q96T54	332 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	EYA1	Q99502	592 aa		12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	GPHN	Q9NQX3	736 aa	Predicted RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	AFDN	P55196	1824 aa	Known RBP	12.22	□□□□□ -0.45
NIF3L1-206	ENST00000416651	HMGB2	P26583	209 aa	Known RBP	12.21	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CRKL	P46109	303 aa	Known RBP	12.21	□□□□□ -0.45
NIF3L1-206	ENST00000416651	CARD11	Q9BXL7	1154 aa		12.21	□□□□□ -0.45
NIF3L1-206	ENST00000416651	SPG7	Q9UQ90	795 aa		12.21	□□□□□ -0.45
NIF3L1-206	ENST00000416651	FLT4	P35916	1363 aa		12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	PTCD1	O75127	700 aa	Known RBP	12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	RGS19	P49795	217 aa		12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	DSG2	Q14126	1118 aa		12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	USPL1	Q5W0Q7	1092 aa		12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	TESK2	Q96S53	571 aa		12.2	□□□□□ -0.46
NIF3L1-206	ENST00000416651	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	PPM1G	O15355	546 aa	Predicted RBP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	ITGBL1	O95965	494 aa	Predicted RBP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	FMR1	Q06787	632 aa	Known RBP eCLIP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	INTS5	Q6P9B9	1019 aa	Known RBP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	IFNL2	Q8IZJ0	200 aa		12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	CCDC24	Q8N4L8	307 aa		12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	AIDA	Q96BJ3	306 aa		12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	TSKS	Q9UJT2	592 aa		12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	TNRC18	O15417	2968 aa	Predicted RBP	12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	TJP1	Q07157	1748 aa		12.19	□□□□□ -0.46
NIF3L1-206	ENST00000416651	PTPN5	P54829	565 aa		12.18	□□□□□ -0.46
NIF3L1-206	ENST00000416651	NFIX	Q14938	502 aa		12.18	□□□□□ -0.46

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms