RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C8orf58Q8NAV2 365 aa18.52■□□□□ 0.55
USP4-203ENST00000415188 SCN11AQ9UI33 1791 aa18.51■□□□□ 0.55
USP4-203ENST00000415188 COL5A3P25940 1745 aaPredicted RBP18.51■□□□□ 0.55
USP4-203ENST00000415188 CNTNAP4Q9C0A0 1308 aa18.51■□□□□ 0.55
USP4-203ENST00000415188 MTHFSDQ2M296 383 aaKnown RBP18.51■□□□□ 0.55
USP4-203ENST00000415188 TRAPPC3LQ5T215 181 aa18.51■□□□□ 0.55
USP4-203ENST00000415188 RC3H1Q5TC82 1133 aaKnown RBP18.51■□□□□ 0.55
USP4-203ENST00000415188 RNMTO43148 476 aaKnown RBP18.5■□□□□ 0.55
USP4-203ENST00000415188 SEC24BO95487 1268 aa18.5■□□□□ 0.55
USP4-203ENST00000415188 SLC52A2Q9HAB3 445 aa18.5■□□□□ 0.55
USP4-203ENST00000415188 ARHGEF1Q92888 912 aaKnown RBP18.49■□□□□ 0.55
USP4-203ENST00000415188 PTPRCP08575 1304 aa18.48■□□□□ 0.55
USP4-203ENST00000415188 HTATSF1O43719 755 aaKnown RBP18.48■□□□□ 0.55
USP4-203ENST00000415188 RPS6KA4O75676 772 aa18.48■□□□□ 0.55
USP4-203ENST00000415188 MMP10P09238 476 aa18.48■□□□□ 0.55
USP4-203ENST00000415188 CHD1LQ86WJ1 897 aa18.48■□□□□ 0.55
USP4-203ENST00000415188 WWC3Q9ULE0 1092 aa18.48■□□□□ 0.55
USP4-203ENST00000415188 MYH14Q7Z406 1995 aaKnown RBP18.48■□□□□ 0.55
USP4-203ENST00000415188 CRKLP46109 303 aaKnown RBP18.47■□□□□ 0.55
USP4-203ENST00000415188 SLC39A6Q13433 755 aa18.47■□□□□ 0.55
USP4-203ENST00000415188 INTS3Q68E01 1043 aaKnown RBP18.47■□□□□ 0.55
USP4-203ENST00000415188 GAS2L2Q8NHY3 880 aa18.47■□□□□ 0.55
USP4-203ENST00000415188 MRC1P22897 1456 aa18.47■□□□□ 0.55
USP4-203ENST00000415188 TJP1Q07157 1748 aa18.46■□□□□ 0.55
USP4-203ENST00000415188 ADRA2BP18089 450 aa18.46■□□□□ 0.55
USP4-203ENST00000415188 GRIN3BO60391 1043 aa18.46■□□□□ 0.54
USP4-203ENST00000415188 EIF5BO60841 1220 aaKnown RBP18.46■□□□□ 0.54
USP4-203ENST00000415188 RFC4P35249 363 aa18.46■□□□□ 0.54
USP4-203ENST00000415188 DCTN1Q14203 1278 aa18.46■□□□□ 0.54
USP4-203ENST00000415188 SOS1Q07889 1333 aaPredicted RBP18.45■□□□□ 0.54
USP4-203ENST00000415188 CACNA1FO60840 1977 aa18.45■□□□□ 0.54
USP4-203ENST00000415188 GYS1P13807 737 aa18.45■□□□□ 0.54
USP4-203ENST00000415188 SLC4A3P48751 1232 aa18.45■□□□□ 0.54
USP4-203ENST00000415188 DNAJC10Q8IXB1 793 aa18.45■□□□□ 0.54
USP4-203ENST00000415188 ELL2O00472 640 aaPredicted RBP18.44■□□□□ 0.54
USP4-203ENST00000415188 NFKBIBQ15653 356 aa18.44■□□□□ 0.54
USP4-203ENST00000415188 BMP2KLQ5H9B9 411 aa18.44■□□□□ 0.54
USP4-203ENST00000415188 NLGN1Q8N2Q7 840 aa18.44■□□□□ 0.54
USP4-203ENST00000415188 RTF1Q92541 710 aaKnown RBP18.44■□□□□ 0.54
USP4-203ENST00000415188 ADAMTS7Q9UKP4 1686 aa18.43■□□□□ 0.54
USP4-203ENST00000415188 INTS5Q6P9B9 1019 aaKnown RBP18.43■□□□□ 0.54
USP4-203ENST00000415188 SRP68Q9UHB9 627 aaKnown RBP18.43■□□□□ 0.54
USP4-203ENST00000415188 CICQ96RK0 1608 aaPredicted RBP18.43■□□□□ 0.54
USP4-203ENST00000415188 C4AP0C0L4 1744 aa18.43■□□□□ 0.54
USP4-203ENST00000415188 KCPQ6ZWJ8 1503 aa18.42■□□□□ 0.54
USP4-203ENST00000415188 BABAM1Q9NWV8 329 aa18.42■□□□□ 0.54
USP4-203ENST00000415188 MCM10Q7L590 875 aa18.41■□□□□ 0.54
USP4-203ENST00000415188 C22orf23Q9BZE7 217 aa18.41■□□□□ 0.54
USP4-203ENST00000415188 LNPKQ9C0E8 428 aa18.4■□□□□ 0.54
USP4-203ENST00000415188 CCDC87Q9NVE4 849 aa18.4■□□□□ 0.54
USP4-203ENST00000415188 N4BP2Q86UW6 1770 aaPredicted RBP18.4■□□□□ 0.54
USP4-203ENST00000415188 CYP19A1P11511 503 aaPredicted RBP18.39■□□□□ 0.54
USP4-203ENST00000415188 IL17REQ8NFR9 667 aa18.39■□□□□ 0.54
USP4-203ENST00000415188 USP42Q9H9J4 1324 aaKnown RBP18.39■□□□□ 0.53
USP4-203ENST00000415188 PXDNLA1KZ92 1463 aa18.39■□□□□ 0.53
USP4-203ENST00000415188 GNAT3A8MTJ3 354 aa18.39■□□□□ 0.53
USP4-203ENST00000415188 ANKRD45Q5TZF3 282 aa18.39■□□□□ 0.53
USP4-203ENST00000415188 RPAP2Q8IXW5 612 aaPredicted RBP18.39■□□□□ 0.53
USP4-203ENST00000415188 C10orf71Q711Q0 1435 aa18.38■□□□□ 0.53
USP4-203ENST00000415188 SIRT2Q8IXJ6 389 aa18.38■□□□□ 0.53
USP4-203ENST00000415188 ANKRD44Q8N8A2 993 aa18.38■□□□□ 0.53
USP4-203ENST00000415188 TSPYL4Q9UJ04 414 aa18.38■□□□□ 0.53
USP4-203ENST00000415188 PARP3Q9Y6F1 533 aa18.38■□□□□ 0.53
USP4-203ENST00000415188 DCTPP1Q9H773 170 aa18.37■□□□□ 0.53
USP4-203ENST00000415188 ATP10DQ9P241 1426 aa18.37■□□□□ 0.53
USP4-203ENST00000415188 ZBTB1Q9Y2K1 713 aa18.37■□□□□ 0.53
USP4-203ENST00000415188 KIF13BQ9NQT8 1826 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 KIAA1551Q9HCM1 1747 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 A0A0G2JLW4 131 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 RBM25P49756 843 aaKnown RBP18.36■□□□□ 0.53
USP4-203ENST00000415188 MFAP1P55081 439 aaKnown RBP18.36■□□□□ 0.53
USP4-203ENST00000415188 DDR1Q08345 913 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 TEFQ10587 303 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 C1orf115Q9H7X2 142 aa18.36■□□□□ 0.53
USP4-203ENST00000415188 USPL1Q5W0Q7 1092 aa18.35■□□□□ 0.53
USP4-203ENST00000415188 TTC5Q8N0Z6 440 aa18.35■□□□□ 0.53
USP4-203ENST00000415188 TBC1D2Q9BYX2 928 aa18.35■□□□□ 0.53
USP4-203ENST00000415188 UBR2Q8IWV8 1755 aa18.35■□□□□ 0.53
USP4-203ENST00000415188 DPEP1P16444 411 aa18.34■□□□□ 0.53
USP4-203ENST00000415188 CCT4P50991 539 aaKnown RBP18.34■□□□□ 0.53
USP4-203ENST00000415188 TGFB2P61812 414 aa18.34■□□□□ 0.53
USP4-203ENST00000415188 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
USP4-203ENST00000415188 ZNF496Q96IT1 587 aaPredicted RBP18.34■□□□□ 0.53
USP4-203ENST00000415188 ZPR1O75312 459 aa18.33■□□□□ 0.53
USP4-203ENST00000415188 ZNF790Q6PG37 636 aa18.33■□□□□ 0.53
USP4-203ENST00000415188 COL15A1P39059 1388 aa18.33■□□□□ 0.53
USP4-203ENST00000415188 KRT24Q2M2I5 525 aa18.33■□□□□ 0.52
USP4-203ENST00000415188 ANTXR1Q9H6X2 564 aa18.33■□□□□ 0.52
USP4-203ENST00000415188 BCS1LQ9Y276 419 aa18.33■□□□□ 0.52
USP4-203ENST00000415188 CEMIPQ8WUJ3 1361 aa18.32■□□□□ 0.52
USP4-203ENST00000415188 SIPA1L3O60292 1781 aaPredicted RBP18.32■□□□□ 0.52
USP4-203ENST00000415188 KCNQ3O43525 872 aa18.32■□□□□ 0.52
USP4-203ENST00000415188 HMMRO75330 724 aa18.32■□□□□ 0.52
USP4-203ENST00000415188 TM4SF1P30408 202 aa18.32■□□□□ 0.52
USP4-203ENST00000415188 POLRMTO00411 1230 aaKnown RBP18.31■□□□□ 0.52
USP4-203ENST00000415188 GIGYF1O75420 1035 aaPredicted RBP18.31■□□□□ 0.52
USP4-203ENST00000415188 SLC4A2P04920 1241 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 C1QTNF8P60827 252 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 CEP85Q6P2H3 762 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 SNX21Q969T3 373 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms