RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SENP2Q9HC62 589 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 LRFN2Q9ULH4 789 aa7.12□□□□□ -1.27
BRCA1-204ENST00000412061 NBPF1Q3BBV0 1214 aa7.11□□□□□ -1.27
BRCA1-204ENST00000412061 C11orf91Q3C1V1 193 aa7.11□□□□□ -1.27
BRCA1-204ENST00000412061 NOM1Q5C9Z4 860 aaKnown RBP7.11□□□□□ -1.27
BRCA1-204ENST00000412061 TXLNAP40222 546 aa7.1□□□□□ -1.27
BRCA1-204ENST00000412061 DGKZQ13574 1117 aa7.1□□□□□ -1.27
BRCA1-204ENST00000412061 LYSMD3Q7Z3D4 306 aa7.1□□□□□ -1.27
BRCA1-204ENST00000412061 ZSCAN29Q8IWY8 852 aaPredicted RBP7.1□□□□□ -1.27
BRCA1-204ENST00000412061 RNF217Q8TC41 542 aa7.1□□□□□ -1.27
BRCA1-204ENST00000412061 ZDHHC3Q9NYG2 299 aa7.1□□□□□ -1.27
BRCA1-204ENST00000412061 NDUFB5O43674 189 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 PHKA2P46019 1235 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 EIF1AXP47813 144 aaKnown RBP7.09□□□□□ -1.27
BRCA1-204ENST00000412061 AAMPQ13685 434 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 HIF1AQ16665 826 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 WDR44Q5JSH3 913 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 NBPF10Q6P3W6 841 aaKnown RBP7.09□□□□□ -1.27
BRCA1-204ENST00000412061 PRICKLE2Q7Z3G6 844 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 RHPN1Q8TCX5 695 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 AIDAQ96BJ3 306 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 ASB16Q96NS5 453 aa7.09□□□□□ -1.27
BRCA1-204ENST00000412061 ANKRD33BA6NCL7 494 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 TTLL8A6PVC2 850 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 HMGB1P09429 215 aaKnown RBP7.08□□□□□ -1.28
BRCA1-204ENST00000412061 BMP1P13497 986 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 TATP17735 454 aaPredicted RBP7.08□□□□□ -1.28
BRCA1-204ENST00000412061 POU4F2Q12837 409 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 KIFC2Q96AC6 838 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 KLK14Q9P0G3 267 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 USP35Q9P2H5 1018 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 BRPF3Q9ULD4 1205 aa7.08□□□□□ -1.28
BRCA1-204ENST00000412061 GPC6Q9Y625 555 aaPredicted RBP7.08□□□□□ -1.28
BRCA1-204ENST00000412061 RGL4Q8IZJ4 473 aa7.07□□□□□ -1.28
BRCA1-204ENST00000412061 IFT43Q96FT9 208 aa7.07□□□□□ -1.28
BRCA1-204ENST00000412061 CITED4Q96RK1 184 aa7.07□□□□□ -1.28
BRCA1-204ENST00000412061 RBCK1Q9BYM8 510 aa7.07□□□□□ -1.28
BRCA1-204ENST00000412061 SOS2Q07890 1332 aaPredicted RBP7.07□□□□□ -1.28
BRCA1-204ENST00000412061 LORP23490 312 aaPredicted RBP7.06□□□□□ -1.28
BRCA1-204ENST00000412061 TRIM46Q7Z4K8 759 aa7.06□□□□□ -1.28
BRCA1-204ENST00000412061 NPAS4Q8IUM7 802 aa7.06□□□□□ -1.28
BRCA1-204ENST00000412061 TIMMDC1Q9NPL8 285 aa7.06□□□□□ -1.28
BRCA1-204ENST00000412061 A0A1B0GTH6 734 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 RBM47A0AV96 593 aaKnown RBP7.05□□□□□ -1.28
BRCA1-204ENST00000412061 ZBTB39O15060 712 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 FZD6O60353 706 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 RHOQP17081 205 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 FAM26DQ5JW98 314 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 BICDL1Q6ZP65 573 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 ETFBKMTQ8IXQ9 262 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 BCL2L13Q9BXK5 485 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 CCDC87Q9NVE4 849 aa7.05□□□□□ -1.28
BRCA1-204ENST00000412061 FIGNL2A6NMB9 653 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 TGFBR3LH3BV60 316 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 GMPRP36959 345 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 ZAP70P43403 619 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 VEGFBP49765 207 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 TREML1Q86YW5 311 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 TMC1Q8TDI8 760 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 C7orf43Q8WVR3 580 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 ZFP42Q96MM3 310 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 NEUROD4Q9HD90 331 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 FAM13BQ9NYF5 915 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 ANKIB1Q9P2G1 1089 aa7.04□□□□□ -1.28
BRCA1-204ENST00000412061 HSP90B1P14625 803 aaKnown RBP7.03□□□□□ -1.28
BRCA1-204ENST00000412061 ATP4AP20648 1035 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 MZF1P28698 734 aaPredicted RBP7.03□□□□□ -1.28
BRCA1-204ENST00000412061 USP5P45974 858 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 PDE3BQ13370 1112 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 COL19A1Q14993 1142 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 IER5Q5VY09 327 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 TMC7Q7Z402 723 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 ATCAYQ86WG3 371 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 SUSD3Q96L08 255 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 DMRTB1Q96MA1 342 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 NXF1Q9UBU9 619 aaKnown RBP7.03□□□□□ -1.28
BRCA1-204ENST00000412061 BCS1LQ9Y276 419 aa7.03□□□□□ -1.28
BRCA1-204ENST00000412061 MICAL2O94851 1124 aa7.02□□□□□ -1.28
BRCA1-204ENST00000412061 PCSK2P16519 638 aa7.02□□□□□ -1.28
BRCA1-204ENST00000412061 MSX1P28360 303 aa7.02□□□□□ -1.28
BRCA1-204ENST00000412061 DNM1Q05193 864 aaKnown RBP7.02□□□□□ -1.28
BRCA1-204ENST00000412061 ARSJQ5FYB0 599 aaPredicted RBP7.02□□□□□ -1.28
BRCA1-204ENST00000412061 EDEM1Q92611 657 aa7.02□□□□□ -1.28
BRCA1-204ENST00000412061 POLIQ9UNA4 740 aa7.02□□□□□ -1.28
BRCA1-204ENST00000412061 PDGFAP04085 211 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.01□□□□□ -1.29
BRCA1-204ENST00000412061 ZNF280CQ8ND82 737 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 GIPC2Q8TF65 315 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 SLC16A10Q8TF71 515 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 HSH2DQ96JZ2 352 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 ZIC5Q96T25 663 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 FAM129BQ96TA1 746 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 DNMT3LQ9UJW3 386 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 DYRK1BQ9Y463 629 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 ERBB4Q15303 1308 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 TREHO43280 583 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 MAN1A2O60476 641 aa7.01□□□□□ -1.29
BRCA1-204ENST00000412061 RPLP1P05386 114 aaKnown RBP7.01□□□□□ -1.29
BRCA1-204ENST00000412061 CDK11BP21127 795 aaKnown RBP7.01□□□□□ -1.29
BRCA1-204ENST00000412061 EAPPQ56P03 285 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms