RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 CCDC88AQ3V6T2 1871 aa29.42■■■□□ 2.3
MSH6-202ENST00000411819 EIF4A1P60842 406 aaKnown RBP29.41■■■□□ 2.3
MSH6-202ENST00000411819 TIAM2Q8IVF5 1701 aa29.41■■■□□ 2.3
MSH6-202ENST00000411819 KDM2BQ8NHM5 1336 aa29.41■■■□□ 2.3
MSH6-202ENST00000411819 HSPA6P17066 643 aa29.4■■■□□ 2.3
MSH6-202ENST00000411819 RIPK4P57078 832 aa29.4■■■□□ 2.3
MSH6-202ENST00000411819 NGEFQ8N5V2 710 aa29.4■■■□□ 2.3
MSH6-202ENST00000411819 NIP7Q9Y221 180 aaKnown RBP eCLIP29.4■■■□□ 2.3
MSH6-202ENST00000411819 LMNB1P20700 586 aa29.39■■■□□ 2.3
MSH6-202ENST00000411819 TNRC6CQ9HCJ0 1690 aaKnown RBP29.39■■■□□ 2.3
MSH6-202ENST00000411819 TSPYL4Q9UJ04 414 aa29.38■■■□□ 2.29
MSH6-202ENST00000411819 ARFGEF2Q9Y6D5 1785 aa29.37■■■□□ 2.29
MSH6-202ENST00000411819 FAM177BA6PVY3 158 aa29.37■■■□□ 2.29
MSH6-202ENST00000411819 NFKBIEO00221 500 aa29.37■■■□□ 2.29
MSH6-202ENST00000411819 C21orf2O43822 256 aa29.37■■■□□ 2.29
MSH6-202ENST00000411819 TOMM70O94826 608 aa29.37■■■□□ 2.29
MSH6-202ENST00000411819 C16orf71Q8IYS4 520 aaPredicted RBP29.37■■■□□ 2.29
MSH6-202ENST00000411819 RRP7AQ9Y3A4 280 aaKnown RBP29.37■■■□□ 2.29
MSH6-202ENST00000411819 RGL2O15211 777 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 MYL6BP14649 208 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 PRELPP51888 382 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 LMOD3Q0VAK6 560 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 HLFQ16534 295 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 CCDC146Q8IYE0 955 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 CNKSR1Q969H4 720 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 SLX4Q8IY92 1834 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 ZC3H4Q9UPT8 1303 aaKnown RBP29.35■■■□□ 2.29
MSH6-202ENST00000411819 FER1L6Q2WGJ9 1857 aa29.35■■■□□ 2.29
MSH6-202ENST00000411819 SRGNP10124 158 aa29.34■■■□□ 2.29
MSH6-202ENST00000411819 TMPOP42166 694 aaKnown RBP29.34■■■□□ 2.29
MSH6-202ENST00000411819 WDR43Q15061 677 aaKnown RBP eCLIP29.34■■■□□ 2.29
MSH6-202ENST00000411819 STYK1Q6J9G0 422 aa29.34■■■□□ 2.29
MSH6-202ENST00000411819 TPTE2Q6XPS3 522 aa29.34■■■□□ 2.29
MSH6-202ENST00000411819 MASTLQ96GX5 879 aa29.34■■■□□ 2.29
MSH6-202ENST00000411819 NUP98P52948 1817 aa29.34■■■□□ 2.29
MSH6-202ENST00000411819 KIF6Q6ZMV9 814 aa29.33■■■□□ 2.29
MSH6-202ENST00000411819 NEUROD2Q15784 382 aa29.32■■■□□ 2.28
MSH6-202ENST00000411819 PRPF40BQ6NWY9 871 aaKnown RBP29.32■■■□□ 2.28
MSH6-202ENST00000411819 GTF2E1P29083 439 aaPredicted RBP29.31■■■□□ 2.28
MSH6-202ENST00000411819 RRAGCQ9HB90 399 aa29.31■■■□□ 2.28
MSH6-202ENST00000411819 MAP3K15Q6ZN16 1313 aa29.3■■■□□ 2.28
MSH6-202ENST00000411819 TTLL7Q6ZT98 887 aa29.3■■■□□ 2.28
MSH6-202ENST00000411819 ZBTB3Q9H5J0 574 aa29.29■■■□□ 2.28
MSH6-202ENST00000411819 DICER1Q9UPY3 1922 aaKnown RBP29.29■■■□□ 2.28
MSH6-202ENST00000411819 ERVV-1B6SEH8 477 aa29.28■■■□□ 2.28
MSH6-202ENST00000411819 TAOK3Q9H2K8 898 aa29.28■■■□□ 2.28
MSH6-202ENST00000411819 CEP350Q5VT06 3117 aa29.27■■■□□ 2.28
MSH6-202ENST00000411819 ERBB4Q15303 1308 aa29.27■■■□□ 2.28
MSH6-202ENST00000411819 NPR1P16066 1061 aa29.27■■■□□ 2.28
MSH6-202ENST00000411819 EIF2S2P20042 333 aaKnown RBP29.27■■■□□ 2.28
MSH6-202ENST00000411819 SOGA3Q5TF21 947 aa29.27■■■□□ 2.28
MSH6-202ENST00000411819 RBM46Q8TBY0 533 aaKnown RBP29.27■■■□□ 2.28
MSH6-202ENST00000411819 RUNDC1Q96C34 613 aa29.26■■■□□ 2.27
MSH6-202ENST00000411819 GLTPD2A6NH11 291 aa29.25■■■□□ 2.27
MSH6-202ENST00000411819 GPTP24298 496 aa29.25■■■□□ 2.27
MSH6-202ENST00000411819 NYXQ9GZU5 481 aa29.25■■■□□ 2.27
MSH6-202ENST00000411819 BABAM1Q9NWV8 329 aa29.25■■■□□ 2.27
MSH6-202ENST00000411819 LTBP3Q9NS15 1303 aa29.24■■■□□ 2.27
MSH6-202ENST00000411819 ERFEQ4G0M1 354 aa29.24■■■□□ 2.27
MSH6-202ENST00000411819 PRKRIP1Q9H875 184 aaPredicted RBP29.24■■■□□ 2.27
MSH6-202ENST00000411819 ABCC12Q96J65 1359 aa29.24■■■□□ 2.27
MSH6-202ENST00000411819 APLP1P51693 650 aa29.23■■■□□ 2.27
MSH6-202ENST00000411819 NUTM1Q86Y26 1132 aa29.23■■■□□ 2.27
MSH6-202ENST00000411819 KLRG2A4D1S0 409 aaPredicted RBP29.22■■■□□ 2.27
MSH6-202ENST00000411819 ADAMTS8Q9UP79 889 aa29.22■■■□□ 2.27
MSH6-202ENST00000411819 LAS1LQ9Y4W2 734 aaKnown RBP29.22■■■□□ 2.27
MSH6-202ENST00000411819 CCDC93Q567U6 631 aa29.21■■■□□ 2.27
MSH6-202ENST00000411819 UBN2Q6ZU65 1347 aa29.2■■■□□ 2.27
MSH6-202ENST00000411819 DPY19L2Q6NUT2 758 aa29.2■■■□□ 2.26
MSH6-202ENST00000411819 NECTIN2Q92692 538 aa29.2■■■□□ 2.26
MSH6-202ENST00000411819 IBTKQ9P2D0 1353 aaPredicted RBP29.19■■■□□ 2.26
MSH6-202ENST00000411819 ANXA1P04083 346 aa29.19■■■□□ 2.26
MSH6-202ENST00000411819 FSTL1Q12841 308 aa29.19■■■□□ 2.26
MSH6-202ENST00000411819 GIGYF2Q6Y7W6 1299 aaKnown RBP29.19■■■□□ 2.26
MSH6-202ENST00000411819 WDR90Q96KV7 1748 aa29.19■■■□□ 2.26
MSH6-202ENST00000411819 VEGFAP15692 232 aaPredicted RBP29.18■■■□□ 2.26
MSH6-202ENST00000411819 PDIA6Q15084 440 aa29.18■■■□□ 2.26
MSH6-202ENST00000411819 PROSER3Q2NL68 480 aa29.18■■■□□ 2.26
MSH6-202ENST00000411819 TRIM35Q9UPQ4 493 aa29.18■■■□□ 2.26
MSH6-202ENST00000411819 ALDH1B1P30837 517 aa29.17■■■□□ 2.26
MSH6-202ENST00000411819 C7orf43Q8WVR3 580 aa29.17■■■□□ 2.26
MSH6-202ENST00000411819 SUSD4Q5VX71 490 aa29.16■■■□□ 2.26
MSH6-202ENST00000411819 KRT24Q2M2I5 525 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 OLFM4Q6UX06 510 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 LRP10Q7Z4F1 713 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 ZNF34Q8IZ26 560 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 SMC1BQ8NDV3 1235 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 ANKRD36CQ5JPF3 1778 aa29.15■■■□□ 2.26
MSH6-202ENST00000411819 RIC1Q4ADV7 1423 aa29.14■■■□□ 2.26
MSH6-202ENST00000411819 CHL1O00533 1208 aa29.14■■■□□ 2.26
MSH6-202ENST00000411819 RPGRQ92834 1020 aaKnown RBP29.14■■■□□ 2.26
MSH6-202ENST00000411819 NTSR2O95665 410 aa29.13■■■□□ 2.25
MSH6-202ENST00000411819 FKBP4Q02790 459 aaKnown RBP eCLIP29.13■■■□□ 2.25
MSH6-202ENST00000411819 AIMP1Q12904 312 aaKnown RBP29.13■■■□□ 2.25
MSH6-202ENST00000411819 CRY2Q49AN0 593 aa29.13■■■□□ 2.25
MSH6-202ENST00000411819 PARP10Q53GL7 1025 aa29.13■■■□□ 2.25
MSH6-202ENST00000411819 PPP1R42Q7Z4L9 355 aa29.13■■■□□ 2.25
MSH6-202ENST00000411819 RTKN2Q8IZC4 609 aa29.11■■■□□ 2.25
MSH6-202ENST00000411819 XAGE3Q8WTP9 111 aa29.11■■■□□ 2.25
MSH6-202ENST00000411819 ZNF277Q9NRM2 450 aaPredicted RBP29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms