RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 PDZRN3Q9UPQ7 1066 aa16.2■□□□□ 0.18
SPTLC1P3-201ENST00000403408 ZNF330Q9Y3S2 320 aaPredicted RBP16.2■□□□□ 0.18
SPTLC1P3-201ENST00000403408 COL3A1P02461 1466 aaPredicted RBP16.19■□□□□ 0.18
SPTLC1P3-201ENST00000403408 IL6STP40189 918 aaPredicted RBP16.19■□□□□ 0.18
SPTLC1P3-201ENST00000403408 EIF4G2P78344 907 aaKnown RBP eCLIP16.19■□□□□ 0.18
SPTLC1P3-201ENST00000403408 LDHDQ86WU2 507 aa16.19■□□□□ 0.18
SPTLC1P3-201ENST00000403408 KNSTRNQ9Y448 316 aa16.19■□□□□ 0.18
SPTLC1P3-201ENST00000403408 PRAMEF22A3QJZ6 481 aa16.18■□□□□ 0.18
SPTLC1P3-201ENST00000403408 LBX1P52954 281 aa16.18■□□□□ 0.18
SPTLC1P3-201ENST00000403408 CNBD1Q8NA66 436 aa16.18■□□□□ 0.18
SPTLC1P3-201ENST00000403408 CNKSR1Q969H4 720 aa16.18■□□□□ 0.18
SPTLC1P3-201ENST00000403408 MASTLQ96GX5 879 aa16.18■□□□□ 0.18
SPTLC1P3-201ENST00000403408 TMEM88BA6NKF7 163 aa16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 CTCFP49711 727 aaPredicted RBP16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 TTC5Q8N0Z6 440 aa16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 SETDB2Q96T68 719 aa16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 ZNF277Q9NRM2 450 aaPredicted RBP16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 USP16Q9Y5T5 823 aa16.17■□□□□ 0.18
SPTLC1P3-201ENST00000403408 COL4A5P29400 1685 aa16.16■□□□□ 0.18
SPTLC1P3-201ENST00000403408 KLRG2A4D1S0 409 aaPredicted RBP16.16■□□□□ 0.18
SPTLC1P3-201ENST00000403408 HSPA8P11142 646 aaKnown RBP16.16■□□□□ 0.18
SPTLC1P3-201ENST00000403408 FMR1Q06787 632 aaKnown RBP eCLIP16.16■□□□□ 0.18
SPTLC1P3-201ENST00000403408 SLC51AQ86UW1 340 aa16.16■□□□□ 0.18
SPTLC1P3-201ENST00000403408 PER1O15534 1290 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 DIAPH1O60610 1272 aaKnown RBP16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 SLC34A2O95436 690 aa16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 LTBP1Q14766 1721 aa16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 EAPPQ56P03 285 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 MAP1SQ66K74 1059 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 SNED1Q8TER0 1413 aa16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 TNRC18O15417 2968 aaPredicted RBP16.15■□□□□ 0.18
SPTLC1P3-201ENST00000403408 CEMIPQ8WUJ3 1361 aa16.14■□□□□ 0.17
SPTLC1P3-201ENST00000403408 IQCA1LA6NCM1 817 aa16.14■□□□□ 0.17
SPTLC1P3-201ENST00000403408 RASSF10A6NK89 507 aa16.14■□□□□ 0.17
SPTLC1P3-201ENST00000403408 DZIP3Q86Y13 1208 aaKnown RBP16.14■□□□□ 0.17
SPTLC1P3-201ENST00000403408 EPHX2P34913 555 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 ST5P78524 1137 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 FKBP4Q02790 459 aaKnown RBP eCLIP16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 CCDC93Q567U6 631 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 ABHD8Q96I13 439 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 PHACTR3Q96KR7 559 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 TEX13AQ9BXU3 409 aaPredicted RBP16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 RNF123Q5XPI4 1314 aa16.13■□□□□ 0.17
SPTLC1P3-201ENST00000403408 GNAT3A8MTJ3 354 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 FZD9O00144 591 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 TEFQ10587 303 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 CNTROBQ8N137 903 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 FMNL2Q96PY5 1086 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 HACL1Q9UJ83 578 aa16.12■□□□□ 0.17
SPTLC1P3-201ENST00000403408 NBPF26B4DH59 902 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 NPR1P16066 1061 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 FAM161AQ3B820 660 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 CC2D1BQ5T0F9 858 aaKnown RBP16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 SOGA3Q5TF21 947 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 NBPF10Q6P3W6 841 aaKnown RBP16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 NBPF5PQ86XG9 351 aaPredicted RBP16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 NBPF15Q8N660 670 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 AIDAQ96BJ3 306 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 KIF7Q2M1P5 1343 aa16.11■□□□□ 0.17
SPTLC1P3-201ENST00000403408 TRIM26Q12899 539 aaPredicted RBP16.1■□□□□ 0.17
SPTLC1P3-201ENST00000403408 DEFB115Q30KQ5 88 aa16.1■□□□□ 0.17
SPTLC1P3-201ENST00000403408 CLEC11AQ9Y240 323 aa16.1■□□□□ 0.17
SPTLC1P3-201ENST00000403408 WDR33Q9C0J8 1336 aaKnown RBP16.1■□□□□ 0.17
SPTLC1P3-201ENST00000403408 HLFQ16534 295 aa16.09■□□□□ 0.17
SPTLC1P3-201ENST00000403408 SYNE4Q8N205 404 aa16.09■□□□□ 0.17
SPTLC1P3-201ENST00000403408 THSD7BQ9C0I4 1608 aa16.08■□□□□ 0.17
SPTLC1P3-201ENST00000403408 FAM177BA6PVY3 158 aa16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 BTBD11A6QL63 1104 aa16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 NPHP1O15259 732 aa16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 IARSP41252 1262 aaKnown RBP16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CLEC4GQ6UXB4 293 aa16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 GAS2L2Q8NHY3 880 aa16.08■□□□□ 0.16
SPTLC1P3-201ENST00000403408 U2SURPO15042 1029 aaKnown RBP16.07■□□□□ 0.16
SPTLC1P3-201ENST00000403408 DDX21Q9NR30 783 aaKnown RBP eCLIP16.07■□□□□ 0.16
SPTLC1P3-201ENST00000403408 ABCC12Q96J65 1359 aa16.07■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CST9Q5W186 159 aa16.06■□□□□ 0.16
SPTLC1P3-201ENST00000403408 NIP7Q9Y221 180 aaKnown RBP eCLIP16.06■□□□□ 0.16
SPTLC1P3-201ENST00000403408 PDE4DIPQ5VU43 2346 aa16.06■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CLSPNQ9HAW4 1339 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 TRAF5O00463 557 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 EPS15P42566 896 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 SCNN1DP51172 638 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 RTKN2Q8IZC4 609 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 GPC2Q8N158 579 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 PCGF6Q9BYE7 350 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 RSPH6AQ9H0K4 717 aa16.05■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CNGB1Q14028 1251 aaPredicted RBP16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CYP4F22Q6NT55 531 aa16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 MCM10Q7L590 875 aa16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 PNMA8AQ86V59 439 aaPredicted RBP16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 TSKSQ9UJT2 592 aa16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 ABT1Q9ULW3 272 aaKnown RBP16.04■□□□□ 0.16
SPTLC1P3-201ENST00000403408 TRPM7Q96QT4 1865 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 PRKAR2BP31323 418 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 RGS19P49795 217 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 MAP2K1Q02750 393 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 DCTN1Q14203 1278 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 CRY2Q49AN0 593 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 TPTE2Q6XPS3 522 aa16.03■□□□□ 0.16
SPTLC1P3-201ENST00000403408 NUTM1Q86Y26 1132 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms