RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TTC41PQ6P2S7 1318 aa15.27■□□□□ 0.03
SHMT1-205ENST00000395684 HCLS1P14317 486 aaPredicted RBP15.27■□□□□ 0.03
SHMT1-205ENST00000395684 HSP90AB4PQ58FF6 505 aa15.27■□□□□ 0.03
SHMT1-205ENST00000395684 ZNF830Q96NB3 372 aaPredicted RBP15.27■□□□□ 0.03
SHMT1-205ENST00000395684 FIBPO43427 364 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 OS9Q13438 667 aaPredicted RBP15.26■□□□□ 0.03
SHMT1-205ENST00000395684 C14orf37Q86TY3 774 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 HOXB7P09629 217 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 KCNA6P17658 529 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 CCDC83Q8IWF9 413 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 DIAPH3Q9NSV4 1193 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 ARHGAP23Q9P227 1491 aa15.26■□□□□ 0.03
SHMT1-205ENST00000395684 KIAA2012Q0VF49 1180 aa15.25■□□□□ 0.03
SHMT1-205ENST00000395684 PRPF40BQ6NWY9 871 aaKnown RBP15.25■□□□□ 0.03
SHMT1-205ENST00000395684 ANKARQ7Z5J8 1434 aa15.25■□□□□ 0.03
SHMT1-205ENST00000395684 GJB2P29033 226 aa15.25■□□□□ 0.03
SHMT1-205ENST00000395684 MTX1Q13505 466 aa15.25■□□□□ 0.03
SHMT1-205ENST00000395684 CLASRPQ8N2M8 674 aaKnown RBP15.25■□□□□ 0.03
SHMT1-205ENST00000395684 JAKMIP1Q96N16 626 aaKnown RBP15.25■□□□□ 0.03
SHMT1-205ENST00000395684 SLIT1O75093 1534 aa15.25■□□□□ 0.03
SHMT1-205ENST00000395684 ADCY5O95622 1261 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 DNM1Q05193 864 aaKnown RBP15.24■□□□□ 0.03
SHMT1-205ENST00000395684 SASS6Q6UVJ0 657 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 IP6K1Q92551 441 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 PDRG1Q9NUG6 133 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 PA2G4Q9UQ80 394 aaKnown RBP15.24■□□□□ 0.03
SHMT1-205ENST00000395684 MTMR6Q9Y217 621 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 LETM1O95202 739 aaPredicted RBP15.24■□□□□ 0.03
SHMT1-205ENST00000395684 ST3GAL1Q11201 340 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 VPS53Q5VIR6 699 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 DDX54Q8TDD1 881 aaKnown RBP15.24■□□□□ 0.03
SHMT1-205ENST00000395684 ZMYND15Q9H091 742 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 ZSWIM6Q9HCJ5 1215 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 ECHDC1Q9NTX5 307 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 CRYBG1Q9Y4K1 1723 aa15.24■□□□□ 0.03
SHMT1-205ENST00000395684 BTBD11A6QL63 1104 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 MED1Q15648 1581 aaPredicted RBP15.23■□□□□ 0.03
SHMT1-205ENST00000395684 KCNB2Q92953 911 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 FUCA2Q9BTY2 467 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 ATP6V1DQ9Y5K8 247 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 ZBTB7CA1YPR0 619 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 NECTIN1Q15223 517 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 GIMAP6Q6P9H5 292 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 MPRIPQ6WCQ1 1025 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 RUFY2Q8WXA3 655 aa15.23■□□□□ 0.03
SHMT1-205ENST00000395684 TTC12Q9H892 705 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-205ENST00000395684 MAP3K2Q9Y2U5 619 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-205ENST00000395684 DYNC1I1O14576 645 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 TEFQ10587 303 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 COL9A3Q14050 684 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-205ENST00000395684 ME3Q16798 604 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 PROSER3Q2NL68 480 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 TM6SF1Q9BZW5 370 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 C9orf78Q9NZ63 289 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-205ENST00000395684 CYP46A1Q9Y6A2 500 aa15.22■□□□□ 0.03
SHMT1-205ENST00000395684 KDM4AO75164 1064 aa15.21■□□□□ 0.03
SHMT1-205ENST00000395684 CWF19L2Q2TBE0 894 aaKnown RBP15.21■□□□□ 0.03
SHMT1-205ENST00000395684 DBF4Q9UBU7 674 aaPredicted RBP15.21■□□□□ 0.03
SHMT1-205ENST00000395684 IFIT2P09913 472 aaKnown RBP15.21■□□□□ 0.03
SHMT1-205ENST00000395684 NECAB1Q8N987 351 aa15.21■□□□□ 0.03
SHMT1-205ENST00000395684 PIBF1Q8WXW3 757 aa15.21■□□□□ 0.03
SHMT1-205ENST00000395684 LRRC59Q96AG4 307 aaKnown RBP15.21■□□□□ 0.03
SHMT1-205ENST00000395684 ZSCAN31Q96LW9 406 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 CHMP4AQ9BY43 222 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 SH2B1Q9NRF2 756 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 USP54Q70EL1 1684 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 AP5Z1O43299 807 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 AKAP4Q5JQC9 854 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 ZNF530Q6P9A1 599 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 THEMISQ8N1K5 641 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 C17orf53Q8N3J3 647 aaPredicted RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 EVI5LQ96CN4 794 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 FAM227BQ96M60 508 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 CCDC171Q6TFL3 1326 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 KDM3BQ7LBC6 1761 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 PRAMEF22A3QJZ6 481 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 NOLC1Q14978 699 aaKnown RBP eCLIP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 AACSQ86V21 672 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 TPCN1Q9ULQ1 816 aa15.2■□□□□ 0.02
SHMT1-205ENST00000395684 RBM8AQ9Y5S9 174 aaKnown RBP15.2■□□□□ 0.02
SHMT1-205ENST00000395684 VPS37CA5D8V6 355 aaPredicted RBP15.19■□□□□ 0.02
SHMT1-205ENST00000395684 ALDH1L1O75891 902 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 CREB3L3Q68CJ9 461 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 KSR2Q6VAB6 950 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 MAP7D2Q96T17 732 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 PHF8Q9UPP1 1060 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 GIGYF1O75420 1035 aaPredicted RBP15.19■□□□□ 0.02
SHMT1-205ENST00000395684 SASH1O94885 1247 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 DNTTIP2Q5QJE6 756 aaKnown RBP15.19■□□□□ 0.02
SHMT1-205ENST00000395684 EAF2Q96CJ1 260 aaPredicted RBP15.19■□□□□ 0.02
SHMT1-205ENST00000395684 GPATCH3Q96I76 525 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 KAZALD1Q96I82 304 aa15.19■□□□□ 0.02
SHMT1-205ENST00000395684 ZKSCAN1P17029 563 aaPredicted RBP15.18■□□□□ 0.02
SHMT1-205ENST00000395684 ERC1Q8IUD2 1116 aa15.18■□□□□ 0.02
SHMT1-205ENST00000395684 MAP4K1Q92918 833 aa15.18■□□□□ 0.02
SHMT1-205ENST00000395684 NMIQ13287 307 aaPredicted RBP15.18■□□□□ 0.02
SHMT1-205ENST00000395684 LTN1O94822 1766 aa15.17■□□□□ 0.02
SHMT1-205ENST00000395684 SETD1BQ9UPS6 1966 aaKnown RBP15.17■□□□□ 0.02
SHMT1-205ENST00000395684 RNMTO43148 476 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms