RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KRT24Q2M2I5 525 aa9.06□□□□□ -0.96
LIMA1-202ENST00000394943 ARHGEF1Q92888 912 aaKnown RBP9.06□□□□□ -0.96
LIMA1-202ENST00000394943 SLC10A5Q5PT55 438 aa9.05□□□□□ -0.96
LIMA1-202ENST00000394943 GIGYF2Q6Y7W6 1299 aaKnown RBP9.05□□□□□ -0.96
LIMA1-202ENST00000394943 AK7Q96M32 723 aa9.05□□□□□ -0.96
LIMA1-202ENST00000394943 RTCBQ9Y3I0 505 aaKnown RBP9.05□□□□□ -0.96
LIMA1-202ENST00000394943 PROSER3Q2NL68 480 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 PLA2G12BQ9BX93 195 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 CDHR2Q9BYE9 1310 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 CASP7P55210 303 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 NEUROD2Q15784 382 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 A1BGP04217 495 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 HDGFL1Q5TGJ6 251 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 SYTL4Q96C24 671 aaPredicted RBP9.04□□□□□ -0.96
LIMA1-202ENST00000394943 CHPF2Q9P2E5 772 aa9.04□□□□□ -0.96
LIMA1-202ENST00000394943 MTFR1LQ9H019 292 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 KIF16BQ96L93 1317 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 CARMIL3Q8ND23 1372 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 FER1L6Q2WGJ9 1857 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 PTCD1O75127 700 aaKnown RBP9.03□□□□□ -0.96
LIMA1-202ENST00000394943 TRAPPC3LQ5T215 181 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 INTS3Q68E01 1043 aaKnown RBP9.03□□□□□ -0.96
LIMA1-202ENST00000394943 KSR2Q6VAB6 950 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 RBM42Q9BTD8 480 aaKnown RBP9.03□□□□□ -0.96
LIMA1-202ENST00000394943 POLRMTO00411 1230 aaKnown RBP9.03□□□□□ -0.96
LIMA1-202ENST00000394943 SSH1Q8WYL5 1049 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 METTL22Q9BUU2 404 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-202ENST00000394943 PDZRN3Q9UPQ7 1066 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 PSME4Q14997 1843 aa9.03□□□□□ -0.96
LIMA1-202ENST00000394943 HSP90AB3PQ58FF7 597 aa9.02□□□□□ -0.96
LIMA1-202ENST00000394943 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.02□□□□□ -0.97
LIMA1-202ENST00000394943 PARP10Q53GL7 1025 aa9.02□□□□□ -0.97
LIMA1-202ENST00000394943 BEND3Q5T5X7 828 aa9.02□□□□□ -0.97
LIMA1-202ENST00000394943 NLGN1Q8N2Q7 840 aa9.02□□□□□ -0.97
LIMA1-202ENST00000394943 GNPATO15228 680 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 ALDH1L1O75891 902 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 FLIIQ13045 1269 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 TCIRG1Q13488 830 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 DICER1Q9UPY3 1922 aaKnown RBP9.01□□□□□ -0.97
LIMA1-202ENST00000394943 UBN2Q6ZU65 1347 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 COL4A1P02462 1669 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 NTSR2O95665 410 aa9.01□□□□□ -0.97
LIMA1-202ENST00000394943 CRY2Q49AN0 593 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 DZIP3Q86Y13 1208 aaKnown RBP9□□□□□ -0.97
LIMA1-202ENST00000394943 H7C1W4 665 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 TTLL7Q6ZT98 887 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 CCDC191Q8NCU4 936 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 IGKV5-2P06315 115 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 G2E3Q7L622 706 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 XAGE3Q8WTP9 111 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 DUOX1Q9NRD9 1551 aa9□□□□□ -0.97
LIMA1-202ENST00000394943 DDR1Q08345 913 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 PDE3AQ14432 1141 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 ANKRD13DQ6ZTN6 518 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 PHAXQ9H814 394 aaKnown RBP8.99□□□□□ -0.97
LIMA1-202ENST00000394943 ZNF652Q9Y2D9 606 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 COPS6Q7L5N1 327 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 AAMPQ13685 434 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 HLFQ16534 295 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 NLRP10Q86W26 655 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 LINS1Q8NG48 757 aa8.99□□□□□ -0.97
LIMA1-202ENST00000394943 API5Q9BZZ5 524 aaKnown RBP8.99□□□□□ -0.97
LIMA1-202ENST00000394943 DDX58O95786 925 aaKnown RBP8.98□□□□□ -0.97
LIMA1-202ENST00000394943 SLC4A2P04920 1241 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 PCCAP05165 728 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-202ENST00000394943 KCNQ4P56696 695 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 RABL6Q3YEC7 729 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-202ENST00000394943 STK31Q9BXU1 1019 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 CD2APQ9Y5K6 639 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 ZNF609O15014 1411 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 NEURL1BA8MQ27 555 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 HOXA10P31260 410 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-202ENST00000394943 MTX1Q13505 466 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 FKBP8Q14318 412 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 NFIXQ14938 502 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 USPL1Q5W0Q7 1092 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 TBC1D9BQ66K14 1250 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 KIF6Q6ZMV9 814 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 TFCP2L1Q9NZI6 479 aa8.98□□□□□ -0.97
LIMA1-202ENST00000394943 ATF7IPQ6VMQ6 1270 aa8.97□□□□□ -0.97
LIMA1-202ENST00000394943 DNAAF4Q8WXU2 420 aa8.97□□□□□ -0.97
LIMA1-202ENST00000394943 CSF1RP07333 972 aa8.97□□□□□ -0.97
LIMA1-202ENST00000394943 NYXQ9GZU5 481 aa8.97□□□□□ -0.97
LIMA1-202ENST00000394943 LAS1LQ9Y4W2 734 aaKnown RBP8.97□□□□□ -0.97
LIMA1-202ENST00000394943 SPEF2Q9C093 1822 aa8.97□□□□□ -0.97
LIMA1-202ENST00000394943 RFC4P35249 363 aa8.96□□□□□ -0.97
LIMA1-202ENST00000394943 CCT4P50991 539 aaKnown RBP8.96□□□□□ -0.97
LIMA1-202ENST00000394943 SF3B3Q15393 1217 aaKnown RBP8.96□□□□□ -0.97
LIMA1-202ENST00000394943 ZBTB38Q8NAP3 1195 aaPredicted RBP8.96□□□□□ -0.97
LIMA1-202ENST00000394943 RCAN3Q9UKA8 241 aa8.96□□□□□ -0.97
LIMA1-202ENST00000394943 TGFB2P61812 414 aa8.96□□□□□ -0.97
LIMA1-202ENST00000394943 SBF1O95248 1867 aa8.96□□□□□ -0.98
LIMA1-202ENST00000394943 SRP68Q9UHB9 627 aaKnown RBP8.96□□□□□ -0.98
LIMA1-202ENST00000394943 ABCC12Q96J65 1359 aa8.96□□□□□ -0.98
LIMA1-202ENST00000394943 IPO8O15397 1037 aaKnown RBP8.95□□□□□ -0.98
LIMA1-202ENST00000394943 MS4A1P11836 297 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 TRIM27P14373 513 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 CANXP27824 592 aaKnown RBP8.95□□□□□ -0.98
LIMA1-202ENST00000394943 KCNA3P22001 575 aa8.95□□□□□ -0.98
LIMA1-202ENST00000394943 GCKRQ14397 625 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms