RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 NEURL1BA8MQ27 555 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 CABP4P57796 275 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 COPS6Q7L5N1 327 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 RIC3Q7Z5B4 369 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 ERC1Q8IUD2 1116 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 SUCLG2Q96I99 432 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 SHANK3Q9BYB0 1731 aa11.06□□□□□ -0.64
TDP1-202ENST00000393452 HSP90AA1P07900 732 aaKnown RBP11.05□□□□□ -0.64
TDP1-202ENST00000393452 MYL6BP14649 208 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 NKX1-1Q15270 411 aaPredicted RBP11.05□□□□□ -0.64
TDP1-202ENST00000393452 ST18O60284 1047 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 ANAPC15P60006 121 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 NEXNQ0ZGT2 675 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 GCKRQ14397 625 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 ANKRD13DQ6ZTN6 518 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 TOM1L2Q6ZVM7 507 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 ZCRB1Q8TBF4 217 aaKnown RBP11.05□□□□□ -0.64
TDP1-202ENST00000393452 CARD10Q9BWT7 1032 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 BICC1Q9H694 974 aaKnown RBP11.05□□□□□ -0.64
TDP1-202ENST00000393452 ARFGEF2Q9Y6D5 1785 aa11.05□□□□□ -0.64
TDP1-202ENST00000393452 PAPPAQ13219 1627 aa11.04□□□□□ -0.64
TDP1-202ENST00000393452 ERVV-2B6SEH9 535 aa11.04□□□□□ -0.64
TDP1-202ENST00000393452 CLASRPQ8N2M8 674 aaKnown RBP11.04□□□□□ -0.64
TDP1-202ENST00000393452 TNPO1Q92973 898 aaKnown RBP11.04□□□□□ -0.64
TDP1-202ENST00000393452 COL15A1P39059 1388 aa11.04□□□□□ -0.64
TDP1-202ENST00000393452 ERBB4Q15303 1308 aa11.04□□□□□ -0.64
TDP1-202ENST00000393452 GLRX3O76003 335 aaKnown RBP11.04□□□□□ -0.64
TDP1-202ENST00000393452 CLEC17AQ6ZS10 378 aa11.04□□□□□ -0.64
TDP1-202ENST00000393452 PA2G4Q9UQ80 394 aaKnown RBP11.04□□□□□ -0.64
TDP1-202ENST00000393452 AFDNP55196 1824 aaKnown RBP11.03□□□□□ -0.64
TDP1-202ENST00000393452 DDX11L8A8MPP1 907 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 IL2RBP14784 551 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 OS9Q13438 667 aaPredicted RBP11.03□□□□□ -0.64
TDP1-202ENST00000393452 MCCP23508 829 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 CNTROBQ8N137 903 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 MYD88Q99836 296 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 IL25Q9H293 177 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 ANO2Q9NQ90 1003 aa11.03□□□□□ -0.64
TDP1-202ENST00000393452 KCPQ6ZWJ8 1503 aa11.02□□□□□ -0.64
TDP1-202ENST00000393452 SGSM2O43147 1006 aa11.02□□□□□ -0.65
TDP1-202ENST00000393452 SASH1O94885 1247 aa11.02□□□□□ -0.65
TDP1-202ENST00000393452 IL27Q8NEV9 243 aa11.02□□□□□ -0.65
TDP1-202ENST00000393452 ECHDC1Q9NTX5 307 aa11.02□□□□□ -0.65
TDP1-202ENST00000393452 FOXD4L1Q9NU39 408 aa11.02□□□□□ -0.65
TDP1-202ENST00000393452 TNS2Q63HR2 1409 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 PLBD2Q8NHP8 589 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 GBP4Q96PP9 640 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 CWC22Q9HCG8 908 aaKnown RBP11.01□□□□□ -0.65
TDP1-202ENST00000393452 PALD1Q9ULE6 856 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 NBPF26B4DH59 902 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 HSPA4P34932 840 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 PIP4K2AP48426 406 aaPredicted RBP11.01□□□□□ -0.65
TDP1-202ENST00000393452 MCM2P49736 904 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 G3BP1Q13283 466 aaKnown RBP eCLIP11.01□□□□□ -0.65
TDP1-202ENST00000393452 RABL6Q3YEC7 729 aaPredicted RBP11.01□□□□□ -0.65
TDP1-202ENST00000393452 EPHA10Q5JZY3 1008 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 NBPF14Q5TI25 921 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 NBPF10Q6P3W6 841 aaKnown RBP11.01□□□□□ -0.65
TDP1-202ENST00000393452 NBPF15Q8N660 670 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 GPATCH3Q96I76 525 aa11.01□□□□□ -0.65
TDP1-202ENST00000393452 RAD50Q92878 1312 aa11□□□□□ -0.65
TDP1-202ENST00000393452 NUP188Q5SRE5 1749 aa11□□□□□ -0.65
TDP1-202ENST00000393452 TRAK2O60296 914 aa11□□□□□ -0.65
TDP1-202ENST00000393452 MAP4K4O95819 1239 aaPredicted RBP11□□□□□ -0.65
TDP1-202ENST00000393452 CYP2E1P05181 493 aaPredicted RBP11□□□□□ -0.65
TDP1-202ENST00000393452 IFIT2P09913 472 aaKnown RBP11□□□□□ -0.65
TDP1-202ENST00000393452 NEK4P51957 841 aa11□□□□□ -0.65
TDP1-202ENST00000393452 EAF2Q96CJ1 260 aaPredicted RBP11□□□□□ -0.65
TDP1-202ENST00000393452 COPRSQ9NQ92 184 aa11□□□□□ -0.65
TDP1-202ENST00000393452 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11□□□□□ -0.65
TDP1-202ENST00000393452 TOGARAM1Q9Y4F4 1720 aa11□□□□□ -0.65
TDP1-202ENST00000393452 CASP7P55210 303 aa10.99□□□□□ -0.65
TDP1-202ENST00000393452 AACSQ86V21 672 aa10.99□□□□□ -0.65
TDP1-202ENST00000393452 RFX5P48382 616 aaPredicted RBP10.99□□□□□ -0.65
TDP1-202ENST00000393452 NUCB2P80303 420 aa10.99□□□□□ -0.65
TDP1-202ENST00000393452 LSG1Q9H089 658 aaKnown RBP10.99□□□□□ -0.65
TDP1-202ENST00000393452 SSFA2P28290 1259 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 EVI5LQ96CN4 794 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 STRN4Q9NRL3 753 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 PTMSP20962 102 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 EVA1CP58658 441 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 UBE3BQ7Z3V4 1068 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 TMX3Q96JJ7 454 aa10.98□□□□□ -0.65
TDP1-202ENST00000393452 CUL4AQ13619 759 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 ZGPATQ8N5A5 531 aaKnown RBP10.97□□□□□ -0.65
TDP1-202ENST00000393452 TJP1Q07157 1748 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 A0A087WZG4 1122 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 H7C1W4 665 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 PTPN12Q05209 780 aaKnown RBP10.97□□□□□ -0.65
TDP1-202ENST00000393452 CWC27Q6UX04 472 aaKnown RBP10.97□□□□□ -0.65
TDP1-202ENST00000393452 KLHDC4Q8TBB5 520 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 DDX54Q8TDD1 881 aaKnown RBP10.97□□□□□ -0.65
TDP1-202ENST00000393452 RUFY2Q8WXA3 655 aa10.97□□□□□ -0.65
TDP1-202ENST00000393452 ATP5J2-PTCD1G3V325 749 aa10.96□□□□□ -0.65
TDP1-202ENST00000393452 PTCD1O75127 700 aaKnown RBP10.96□□□□□ -0.65
TDP1-202ENST00000393452 INTS4Q96HW7 963 aaKnown RBP10.96□□□□□ -0.65
TDP1-202ENST00000393452 SIL1Q9H173 461 aa10.96□□□□□ -0.65
TDP1-202ENST00000393452 SNRKQ9NRH2 765 aa10.96□□□□□ -0.65
TDP1-202ENST00000393452 DIAPH3Q9NSV4 1193 aa10.96□□□□□ -0.65
TDP1-202ENST00000393452 FSD2A1L4K1 749 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 140 ms