RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CHD1LQ86WJ1 897 aa22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 NBPF15Q8N660 670 aa22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 LRRFIP2Q9Y608 721 aaKnown RBP22.62■■□□□ 1.21
CCDC88C-203ENST00000389856 A1BGP04217 495 aa22.61■■□□□ 1.21
CCDC88C-203ENST00000389856 SKAP1Q86WV1 359 aa22.61■■□□□ 1.21
CCDC88C-203ENST00000389856 ACSBG1Q96GR2 724 aa22.61■■□□□ 1.21
CCDC88C-203ENST00000389856 ANKRD45Q5TZF3 282 aa22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 KIF6Q6ZMV9 814 aa22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 UTYO14607 1347 aa22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 GRM8O00222 908 aa22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 ONECUT3O60422 494 aaPredicted RBP22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 MYD88Q99836 296 aa22.6■■□□□ 1.21
CCDC88C-203ENST00000389856 TJP1Q07157 1748 aa22.59■■□□□ 1.21
CCDC88C-203ENST00000389856 ZNF831Q5JPB2 1677 aa22.59■■□□□ 1.21
CCDC88C-203ENST00000389856 AFDNP55196 1824 aaKnown RBP22.59■■□□□ 1.21
CCDC88C-203ENST00000389856 NUP188Q5SRE5 1749 aa22.58■■□□□ 1.21
CCDC88C-203ENST00000389856 PALLDQ8WX93 1383 aa22.58■■□□□ 1.2
CCDC88C-203ENST00000389856 NEURL1BA8MQ27 555 aa22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 CYP19A1P11511 503 aaPredicted RBP22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 PIP4K2AP48426 406 aaPredicted RBP22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 NHSQ6T4R5 1651 aa22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 CWF19L2Q2TBE0 894 aaKnown RBP22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 QTRT2Q9H974 415 aaKnown RBP22.57■■□□□ 1.2
CCDC88C-203ENST00000389856 NBPF7P0C2Y1 421 aaPredicted RBP22.56■■□□□ 1.2
CCDC88C-203ENST00000389856 GCKRQ14397 625 aa22.56■■□□□ 1.2
CCDC88C-203ENST00000389856 LOC102724428A0A0B4J2F2 783 aa22.55■■□□□ 1.2
CCDC88C-203ENST00000389856 IGKV5-2P06315 115 aa22.55■■□□□ 1.2
CCDC88C-203ENST00000389856 SIK1P57059 783 aa22.55■■□□□ 1.2
CCDC88C-203ENST00000389856 HSP90AB4PQ58FF6 505 aa22.55■■□□□ 1.2
CCDC88C-203ENST00000389856 LNPKQ9C0E8 428 aa22.55■■□□□ 1.2
CCDC88C-203ENST00000389856 ATP6V1AP38606 617 aa22.54■■□□□ 1.2
CCDC88C-203ENST00000389856 IL6STP40189 918 aaPredicted RBP22.54■■□□□ 1.2
CCDC88C-203ENST00000389856 MTX1Q13505 466 aa22.54■■□□□ 1.2
CCDC88C-203ENST00000389856 ZNF772Q68DY9 489 aaPredicted RBP22.54■■□□□ 1.2
CCDC88C-203ENST00000389856 SSH3Q8TE77 659 aa22.54■■□□□ 1.2
CCDC88C-203ENST00000389856 HSP90AB3PQ58FF7 597 aa22.53■■□□□ 1.2
CCDC88C-203ENST00000389856 TTLL7Q6ZT98 887 aa22.53■■□□□ 1.2
CCDC88C-203ENST00000389856 SEPT12Q8IYM1 358 aa22.53■■□□□ 1.2
CCDC88C-203ENST00000389856 COL15A1P39059 1388 aa22.53■■□□□ 1.2
CCDC88C-203ENST00000389856 SRGAP3O43295 1099 aa22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 RAB11FIP3O75154 756 aa22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 PPP1R42Q7Z4L9 355 aa22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 CCDC191Q8NCU4 936 aa22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 SLC4A9Q96Q91 983 aa22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 CWC25Q9NXE8 425 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 ZNF330Q9Y3S2 320 aaPredicted RBP22.52■■□□□ 1.2
CCDC88C-203ENST00000389856 POLA2Q14181 598 aa22.51■■□□□ 1.19
CCDC88C-203ENST00000389856 CCDC87Q9NVE4 849 aa22.51■■□□□ 1.19
CCDC88C-203ENST00000389856 RREB1Q92766 1687 aa22.51■■□□□ 1.19
CCDC88C-203ENST00000389856 ZBTB3Q9H5J0 574 aa22.5■■□□□ 1.19
CCDC88C-203ENST00000389856 DAXXQ9UER7 740 aaPredicted RBP22.5■■□□□ 1.19
CCDC88C-203ENST00000389856 MAP3K15Q6ZN16 1313 aa22.5■■□□□ 1.19
CCDC88C-203ENST00000389856 PNMA6EA0A0J9YXQ4 647 aa22.49■■□□□ 1.19
CCDC88C-203ENST00000389856 LRRCC1Q9C099 1032 aa22.49■■□□□ 1.19
CCDC88C-203ENST00000389856 BTAF1O14981 1849 aa22.49■■□□□ 1.19
CCDC88C-203ENST00000389856 KCNQ2O43526 872 aa22.49■■□□□ 1.19
CCDC88C-203ENST00000389856 TRIM28Q13263 835 aaKnown RBP22.49■■□□□ 1.19
CCDC88C-203ENST00000389856 A0A087WZG4 1122 aa22.48■■□□□ 1.19
CCDC88C-203ENST00000389856 ERVV-1B6SEH8 477 aa22.48■■□□□ 1.19
CCDC88C-203ENST00000389856 TCIRG1Q13488 830 aa22.48■■□□□ 1.19
CCDC88C-203ENST00000389856 ZBTB1Q9Y2K1 713 aa22.48■■□□□ 1.19
CCDC88C-203ENST00000389856 COL5A3P25940 1745 aaPredicted RBP22.47■■□□□ 1.19
CCDC88C-203ENST00000389856 ATP5J2-PTCD1G3V325 749 aa22.47■■□□□ 1.19
CCDC88C-203ENST00000389856 HMGB2P26583 209 aaKnown RBP22.47■■□□□ 1.19
CCDC88C-203ENST00000389856 ARXQ96QS3 562 aa22.47■■□□□ 1.19
CCDC88C-203ENST00000389856 ERC1Q8IUD2 1116 aa22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 SUCLG2Q96I99 432 aa22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 SBF2Q86WG5 1849 aa22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 SURF6O75683 361 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 CRKLP46109 303 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 GIGYF2Q6Y7W6 1299 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 ISCA1Q9BUE6 129 aa22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 UPF2Q9HAU5 1272 aaKnown RBP22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 EXOC6BQ9Y2D4 811 aa22.46■■□□□ 1.19
CCDC88C-203ENST00000389856 ANKRD36CQ5JPF3 1778 aa22.45■■□□□ 1.19
CCDC88C-203ENST00000389856 EIF5BO60841 1220 aaKnown RBP22.45■■□□□ 1.18
CCDC88C-203ENST00000389856 RBM6P78332 1123 aaKnown RBP22.45■■□□□ 1.18
CCDC88C-203ENST00000389856 UBE3BQ7Z3V4 1068 aa22.45■■□□□ 1.18
CCDC88C-203ENST00000389856 H7C1W4 665 aa22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 EIF5P55010 431 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 BMP2KLQ5H9B9 411 aa22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 RTL5Q5HYW3 569 aaPredicted RBP22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 FAM196AQ6ZSG2 479 aa22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 DZIP3Q86Y13 1208 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 KIF1BPQ96EK5 621 aa22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 BICC1Q9H694 974 aaKnown RBP22.44■■□□□ 1.18
CCDC88C-203ENST00000389856 OS9Q13438 667 aaPredicted RBP22.43■■□□□ 1.18
CCDC88C-203ENST00000389856 INTS5Q6P9B9 1019 aaKnown RBP22.43■■□□□ 1.18
CCDC88C-203ENST00000389856 APBB1O00213 710 aa22.42■■□□□ 1.18
CCDC88C-203ENST00000389856 ITPK1Q13572 414 aa22.42■■□□□ 1.18
CCDC88C-203ENST00000389856 CNTNAP4Q9C0A0 1308 aa22.42■■□□□ 1.18
CCDC88C-203ENST00000389856 KRT27Q7Z3Y8 459 aa22.42■■□□□ 1.18
CCDC88C-203ENST00000389856 BCL11BQ9C0K0 894 aaPredicted RBP22.42■■□□□ 1.18
CCDC88C-203ENST00000389856 LY75O60449 1722 aa22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 RGL2O15211 777 aa22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 RABL6Q3YEC7 729 aaPredicted RBP22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 RC3H1Q5TC82 1133 aaKnown RBP22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 ZNF652Q9Y2D9 606 aa22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 NUP98P52948 1817 aa22.4■■□□□ 1.18
CCDC88C-203ENST00000389856 PCCAP05165 728 aaPredicted RBP22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms