RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 HIP1RO75146 1068 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 KANK3Q6NY19 840 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 PRPF38AQ8NAV1 312 aaKnown RBP9.49□□□□□ -0.89
USP48-203ENST00000374732 LZTS2Q9BRK4 669 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 MKS1Q9NXB0 559 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 IL16Q14005 1332 aa9.49□□□□□ -0.89
USP48-203ENST00000374732 LDHCP07864 332 aa9.48□□□□□ -0.89
USP48-203ENST00000374732 RASA3Q14644 834 aa9.48□□□□□ -0.89
USP48-203ENST00000374732 SWT1Q5T5J6 900 aaKnown RBP9.48□□□□□ -0.89
USP48-203ENST00000374732 ZCCHC8Q6NZY4 707 aaKnown RBP9.48□□□□□ -0.89
USP48-203ENST00000374732 FMNL3Q8IVF7 1028 aa9.48□□□□□ -0.89
USP48-203ENST00000374732 LMBRD2Q68DH5 695 aaPredicted RBP9.48□□□□□ -0.89
USP48-203ENST00000374732 PROSER2Q86WR7 435 aaPredicted RBP9.48□□□□□ -0.89
USP48-203ENST00000374732 TRIML1Q8N9V2 468 aa9.48□□□□□ -0.89
USP48-203ENST00000374732 KIF15Q9NS87 1388 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 UNC13BO14795 1591 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 CCDC66A2RUB6 948 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 KIF5CO60282 957 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 NLGN1Q8N2Q7 840 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 NEK9Q8TD19 979 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 SCYL1Q96KG9 808 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 LARP6Q9BRS8 491 aaKnown RBP9.47□□□□□ -0.89
USP48-203ENST00000374732 TMEM63CQ9P1W3 806 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 SHTN1A0MZ66 631 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 GOLGA6L22H0YM25 854 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 SLC7A5Q01650 507 aa9.47□□□□□ -0.89
USP48-203ENST00000374732 C10orf62Q5T681 223 aaPredicted RBP9.47□□□□□ -0.89
USP48-203ENST00000374732 TRPC1P48995 793 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 CBX1P83916 185 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 FXNQ16595 210 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 ZSCAN26Q16670 478 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 DHX38Q92620 1227 aaKnown RBP9.46□□□□□ -0.89
USP48-203ENST00000374732 KIF2CQ99661 725 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 TOMM22Q9NS69 142 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 KIF3AQ9Y496 699 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 GJA3Q9Y6H8 435 aa9.46□□□□□ -0.89
USP48-203ENST00000374732 NUP155O75694 1391 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 SETSIPP0DME0 302 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 ATICP31939 592 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 FAM160A1Q05DH4 1040 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 TAX1BP1Q86VP1 789 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 MPHOSPH6Q99547 160 aaKnown RBP9.46□□□□□ -0.9
USP48-203ENST00000374732 SLX1AQ9BQ83 275 aa9.46□□□□□ -0.9
USP48-203ENST00000374732 BICDL2A1A5D9 508 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 BOLA2-SMG1P6H3BVE0 249 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 SEMA3EO15041 775 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 NOP2P46087 812 aaKnown RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 NBPF8Q3BBV2 869 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 TTC39BQ5VTQ0 682 aaPredicted RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 SMCR8Q8TEV9 937 aaPredicted RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 ALDH8A1Q9H2A2 487 aaPredicted RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 CD248Q9HCU0 757 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 HTATSF1O43719 755 aaKnown RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 ZNF16P17020 682 aaPredicted RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 GUCY2CP25092 1073 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 MYO1HQ8N1T3 1032 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 IL17RAQ96F46 866 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 SLC26A8Q96RN1 970 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 KNSTRNQ9Y448 316 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 CCDC7Q96M83 1385 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 BMS1Q14692 1282 aaKnown RBP9.45□□□□□ -0.9
USP48-203ENST00000374732 CHCHD4Q8N4Q1 142 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 LNPKQ9C0E8 428 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 TMX1Q9H3N1 280 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 BRMS1Q9HCU9 246 aa9.45□□□□□ -0.9
USP48-203ENST00000374732 A2MP01023 1474 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 CAMSAP1Q5T5Y3 1602 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 GTPBP6O43824 516 aaPredicted RBP9.44□□□□□ -0.9
USP48-203ENST00000374732 NEFHP12036 1026 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 HNRNPMP52272 730 aaKnown RBP eCLIP9.44□□□□□ -0.94e-8■□□□□ 11.3
USP48-203ENST00000374732 UTP6Q9NYH9 597 aaKnown RBP9.44□□□□□ -0.9
USP48-203ENST00000374732 SLC45A1Q9Y2W3 748 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 LMTK2Q8IWU2 1503 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 SYCP2Q9BX26 1530 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 ARHGAP31Q2M1Z3 1444 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 PPFIA2O75334 1257 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 PTK7Q13308 1070 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 TSNAXIP1Q2TAA8 658 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 CTR9Q6PD62 1173 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 WAPLQ7Z5K2 1190 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 STAG2Q8N3U4 1231 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 KCNB2Q92953 911 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 KCNH8Q96L42 1107 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 RSPH14Q9UHP6 348 aa9.44□□□□□ -0.9
USP48-203ENST00000374732 NEURL4Q96JN8 1562 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 DUOX2Q9NRD8 1548 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 CD53P19397 219 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 IL4RP24394 825 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 RASSF7Q02833 373 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 KCTD2Q14681 263 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 ALDH1L2Q3SY69 923 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 EGFLAMQ63HQ2 1017 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 DDX27Q96GQ7 796 aaKnown RBP9.43□□□□□ -0.9
USP48-203ENST00000374732 CENPOQ9BU64 300 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 PICK1Q9NRD5 415 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 PLSCR2Q9NRY7 297 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 TMOD4Q9NZQ9 345 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 RALGAPBQ86X10 1494 aa9.43□□□□□ -0.9
USP48-203ENST00000374732 CLTCQ00610 1675 aaKnown RBP9.43□□□□□ -0.9
USP48-203ENST00000374732 IQGAP3Q86VI3 1631 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms