RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TTLL7Q6ZT98 887 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 USP44Q9H0E7 712 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 RGS17Q9UGC6 210 aaPredicted RBP16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 LOC102724428A0A0B4J2F2 783 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 SIK1P57059 783 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 ITPK1Q13572 414 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 BECN1Q14457 450 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 SRCIN1Q9C0H9 1055 aa16.39■□□□□ 0.21
SQSTM1-201ENST00000360718 NUP188Q5SRE5 1749 aa16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 GNAI3P08754 354 aa16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 GSE1Q14687 1217 aa16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 CWF19L2Q2TBE0 894 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 UPF2Q9HAU5 1272 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 MYH14Q7Z406 1995 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 ANKRD13DQ6ZTN6 518 aa16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 CICQ96RK0 1608 aaPredicted RBP16.38■□□□□ 0.21
SQSTM1-201ENST00000360718 AFDNP55196 1824 aaKnown RBP16.37■□□□□ 0.21
SQSTM1-201ENST00000360718 STARD3NLO95772 234 aa16.37■□□□□ 0.21
SQSTM1-201ENST00000360718 RIC3Q7Z5B4 369 aa16.37■□□□□ 0.21
SQSTM1-201ENST00000360718 IGKV5-2P06315 115 aa16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 ATP6V1AP38606 617 aa16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 KCNQ4P56696 695 aa16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 RBM6P78332 1123 aaKnown RBP16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 ZBTB1Q9Y2K1 713 aa16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 NBPF7P0C2Y1 421 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 COL5A3P25940 1745 aaPredicted RBP16.36■□□□□ 0.21
SQSTM1-201ENST00000360718 CEP85Q6P2H3 762 aa16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 GNAI2P04899 355 aa16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 NEXNQ0ZGT2 675 aa16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 RPAP2Q8IXW5 612 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 SMARCC1Q92922 1105 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 METTL22Q9BUU2 404 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 ZNF330Q9Y3S2 320 aaPredicted RBP16.35■□□□□ 0.21
SQSTM1-201ENST00000360718 KRT27Q7Z3Y8 459 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 LINS1Q8NG48 757 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 PLBD2Q8NHP8 589 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 MYD88Q99836 296 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 ZNF831Q5JPB2 1677 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 RREB1Q92766 1687 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 ALDH1L1O75891 902 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 INTS5Q6P9B9 1019 aaKnown RBP16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 ZBTB3Q9H5J0 574 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 PDZRN3Q9UPQ7 1066 aa16.34■□□□□ 0.21
SQSTM1-201ENST00000360718 UBTFL1P0CB47 393 aaPredicted RBP16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 ANKRD44Q8N8A2 993 aa16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 LRRFIP2Q9Y608 721 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 NEURL1BA8MQ27 555 aa16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 CRKLP46109 303 aaKnown RBP16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 POTEAQ6S8J7 498 aa16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 HDAC5Q9UQL6 1122 aa16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 LY75O60449 1722 aa16.33■□□□□ 0.2
SQSTM1-201ENST00000360718 ATP5J2-PTCD1G3V325 749 aa16.32■□□□□ 0.2
SQSTM1-201ENST00000360718 HMMRO75330 724 aa16.32■□□□□ 0.2
SQSTM1-201ENST00000360718 SMC5Q8IY18 1101 aa16.32■□□□□ 0.2
SQSTM1-201ENST00000360718 LINC00116Q8NCU8 138 aa16.31■□□□□ 0.2
SQSTM1-201ENST00000360718 GCC1Q96CN9 775 aa16.31■□□□□ 0.2
SQSTM1-201ENST00000360718 C9orf78Q9NZ63 289 aaPredicted RBP16.31■□□□□ 0.2
SQSTM1-201ENST00000360718 CCDC87Q9NVE4 849 aa16.3■□□□□ 0.2
SQSTM1-201ENST00000360718 RXRBP28702 533 aa16.3■□□□□ 0.2
SQSTM1-201ENST00000360718 BCL11BQ9C0K0 894 aaPredicted RBP16.3■□□□□ 0.2
SQSTM1-201ENST00000360718 PNMA6EA0A0J9YXQ4 647 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 SEC24BO95487 1268 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 GCKRQ14397 625 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 FAM196AQ6ZSG2 479 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 JARID2Q92833 1246 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 TAF1LQ8IZX4 1826 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 UTYO14607 1347 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 GRM8O00222 908 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 IL6STP40189 918 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 EIF5P55010 431 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 KAZALD1Q96I82 304 aa16.29■□□□□ 0.2
SQSTM1-201ENST00000360718 TRIM37O94972 964 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 HLFQ16534 295 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 KIF6Q6ZMV9 814 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 SMIM5Q71RC9 77 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 ARXQ96QS3 562 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 TBC1D2BQ9UPU7 963 aa16.28■□□□□ 0.2
SQSTM1-201ENST00000360718 NUP98P52948 1817 aa16.27■□□□□ 0.2
SQSTM1-201ENST00000360718 IBTKQ9P2D0 1353 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-201ENST00000360718 MAP3K15Q6ZN16 1313 aa16.27■□□□□ 0.2
SQSTM1-201ENST00000360718 FRAT2O75474 233 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-201ENST00000360718 SUCLG2Q96I99 432 aa16.27■□□□□ 0.2
SQSTM1-201ENST00000360718 ATP8B2P98198 1209 aa16.26■□□□□ 0.19
SQSTM1-201ENST00000360718 TBC1D32Q96NH3 1257 aa16.26■□□□□ 0.19
SQSTM1-201ENST00000360718 DCTPP1Q9H773 170 aa16.26■□□□□ 0.19
SQSTM1-201ENST00000360718 CCNL1Q9UK58 526 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-201ENST00000360718 DZIP3Q86Y13 1208 aaKnown RBP16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 LRRC4BQ9NT99 713 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 ANKRD36CQ5JPF3 1778 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 CASP7P55210 303 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 NUCB1Q02818 461 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 TCIRG1Q13488 830 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 EPHA10Q5JZY3 1008 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 ANKRD45Q5TZF3 282 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 PPP1R42Q7Z4L9 355 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 AMIGO3Q86WK7 504 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 ISCA1Q9BUE6 129 aa16.25■□□□□ 0.19
SQSTM1-201ENST00000360718 GIGYF2Q6Y7W6 1299 aaKnown RBP16.24■□□□□ 0.19
SQSTM1-201ENST00000360718 UBE3BQ7Z3V4 1068 aa16.24■□□□□ 0.19
SQSTM1-201ENST00000360718 CNTNAP4Q9C0A0 1308 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms