RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 AEBP1Q8IUX7 1158 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 PDZRN3Q9UPQ7 1066 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 NPC1L1Q9UHC9 1359 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 NKTRP30414 1462 aaKnown RBP3.32□□□□□ -1.88
VPS54-202ENST00000354504 ADAMTS13Q76LX8 1427 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 FAM208AQ9UK61 1670 aaKnown RBP3.32□□□□□ -1.88
VPS54-202ENST00000354504 LIAT1Q6ZQX7 453 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 FAM174AQ8TBP5 190 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 ALG2Q9H553 416 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 ZBTB3Q9H5J0 574 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 PRKRIP1Q9H875 184 aaPredicted RBP3.32□□□□□ -1.88
VPS54-202ENST00000354504 ZNF521Q96K83 1311 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 KDM3BQ7LBC6 1761 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 PALM3A6NDB9 673 aaPredicted RBP3.31□□□□□ -1.88
VPS54-202ENST00000354504 DEPDC4Q8N2C3 294 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 SSH2Q76I76 1423 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 PTPRUQ92729 1446 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 ADGRF5Q8IZF2 1346 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 TFIP11Q9UBB9 837 aaKnown RBP3.31□□□□□ -1.88
VPS54-202ENST00000354504 EFCAB2Q5VUJ9 269 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 ZNF787Q6DD87 383 aa3.31□□□□□ -1.88
VPS54-202ENST00000354504 PTCRAQ6ISU1 281 aaPredicted RBP3.31□□□□□ -1.88
VPS54-202ENST00000354504 FAM160A2Q8N612 972 aaPredicted RBP3.31□□□□□ -1.88
VPS54-202ENST00000354504 MED1Q15648 1581 aaPredicted RBP3.3□□□□□ -1.88
VPS54-202ENST00000354504 RAD21O60216 631 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 VSIG8P0DPA2 414 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 KCNH2Q12809 1159 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 SCUBE3Q8IX30 993 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 STK32AQ8WU08 396 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 ZMIZ1Q9ULJ6 1067 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 PAPPAQ13219 1627 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 TMEM88BA6NKF7 163 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 Q6ZNB5 142 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 GPKOWQ92917 476 aaPredicted RBP eCLIP3.3□□□□□ -1.88
VPS54-202ENST00000354504 PPP1R12CQ9BZL4 782 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 ATP7BP35670 1465 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 CPSF1Q10570 1443 aaKnown RBP3.3□□□□□ -1.88
VPS54-202ENST00000354504 COPS2P61201 443 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 FOXD4L5Q5VV16 416 aaPredicted RBP3.3□□□□□ -1.88
VPS54-202ENST00000354504 PHLDB3Q6NSJ2 640 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 FOXD4L4Q8WXT5 416 aaPredicted RBP3.3□□□□□ -1.88
VPS54-202ENST00000354504 ZNF516Q92618 1163 aa3.3□□□□□ -1.88
VPS54-202ENST00000354504 SPAG9O60271 1321 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 YTHDC2Q9H6S0 1430 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 STAU1O95793 577 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 F12P00748 615 aaPredicted RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 JUNDP17535 347 aa3.29□□□□□ -1.88
VPS54-202ENST00000354504 NKX2-3Q8TAU0 364 aa3.29□□□□□ -1.88
VPS54-202ENST00000354504 SPSB2Q99619 263 aa3.29□□□□□ -1.88
VPS54-202ENST00000354504 ZC3H4Q9UPT8 1303 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 DDX10Q13206 875 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 NOM1Q5C9Z4 860 aaKnown RBP3.29□□□□□ -1.88
VPS54-202ENST00000354504 AAASQ9NRG9 546 aa3.29□□□□□ -1.88
VPS54-202ENST00000354504 UBR2Q8IWV8 1755 aa3.29□□□□□ -1.88
VPS54-202ENST00000354504 PDIA4P13667 645 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 LMOD1P29536 600 aaPredicted RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 PNISRQ8TF01 805 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 CARD14Q9BXL6 1004 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 NDUFB9Q9Y6M9 179 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 PKD1L3Q7Z443 1732 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 ST20-MTHFSA0A0A6YYL1 179 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 RAPGEF3O95398 923 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 INSM1Q01101 510 aaPredicted RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 CRTC2Q53ET0 693 aaPredicted RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 C4orf48Q5BLP8 95 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 ZNF697Q5TEC3 545 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 CCDC97Q96F63 343 aaPredicted RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 MAFBQ9Y5Q3 323 aaPredicted RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 KTN1Q86UP2 1357 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 NFAT5O94916 1531 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 CACNA1FO60840 1977 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 TRMT2AQ8IZ69 625 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 C14orf93Q9H972 538 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 SERPINA10Q9UK55 444 aa3.28□□□□□ -1.88
VPS54-202ENST00000354504 PARP4Q9UKK3 1724 aaKnown RBP3.28□□□□□ -1.88
VPS54-202ENST00000354504 C5P01031 1676 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 MCCD1P59942 119 aaPredicted RBP3.27□□□□□ -1.89
VPS54-202ENST00000354504 MST1RQ04912 1400 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 CAPN12Q6ZSI9 719 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 PNPLA6Q8IY17 1366 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 KCTD17Q8N5Z5 321 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 KIAA1024Q9UPX6 916 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 MTMR7Q9Y216 660 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 SCN11AQ9UI33 1791 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 NHSL1Q5SYE7 1610 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 CDK15Q96Q40 435 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 ROCK2O75116 1388 aaKnown RBP3.27□□□□□ -1.89
VPS54-202ENST00000354504 PTPRNQ16849 979 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 PLA2G2CQ5R387 149 aa3.27□□□□□ -1.89
VPS54-202ENST00000354504 SUPT16HQ9Y5B9 1047 aaKnown RBP3.27□□□□□ -1.89
VPS54-202ENST00000354504 NCAPD2Q15021 1401 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 BRD4O60885 1362 aaPredicted RBP3.26□□□□□ -1.89
VPS54-202ENST00000354504 PLEKHH1Q9ULM0 1364 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 DDX60Q8IY21 1712 aaKnown RBP3.26□□□□□ -1.89
VPS54-202ENST00000354504 SIAH2O43255 324 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 EIF4G2P78344 907 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS54-202ENST00000354504 LYPD8Q6UX82 237 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 RETREG3Q86VR2 466 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 TRIM47Q96LD4 638 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 MAP4K5Q9Y4K4 846 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms