RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 PNMA6FA0A0J9YX94 578 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 HOXB4P17483 251 aaPredicted RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 USP4Q13107 963 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 NLGN1Q8N2Q7 840 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 ZFAND3Q9H8U3 227 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 VTI1BQ9UEU0 232 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 RBM19Q9Y4C8 960 aaKnown RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 OPLAHO14841 1288 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 FSHRP23945 695 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 DNM1Q05193 864 aaKnown RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 SF3B2Q13435 895 aaKnown RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 MEI1Q5TIA1 1274 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 USPL1Q5W0Q7 1092 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 C16orf46Q6P387 395 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 BPHLQ86WA6 291 aaPredicted RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 ZDHHC1Q8WTX9 485 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 GPATCH3Q96I76 525 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 CWC22Q9HCG8 908 aaKnown RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 LZTS3O60299 673 aaPredicted RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 CCDC144BQ3MJ40 725 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 SLC9A9Q8IVB4 645 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 SEPT12Q8IYM1 358 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 ARHGEF10LQ9HCE6 1279 aa2.48□□□□□ -2.01
BRCA1-202ENST00000354071 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP2.48□□□□□ -2.01
BRCA1-202ENST00000354071 NPR3P17342 541 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 XPCQ01831 940 aaPredicted RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 ARMC2Q8NEN0 867 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 IQSEC2Q5JU85 1478 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 TM4SF5O14894 197 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 PPP1R12BO60237 982 aaPredicted RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 SORBS3O60504 671 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 VSIG8P0DPA2 414 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 DAB2P98082 770 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 NFX1Q12986 1120 aaKnown RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 PPP1R26Q5T8A7 1209 aaPredicted RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 RNF217Q8TC41 542 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 C2orf49Q9BVC5 232 aaPredicted RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 GRIP2Q9C0E4 1043 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 GSK3AP49840 483 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 HIRAP54198 1017 aaPredicted RBP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 KRT76Q01546 638 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 PSMD2Q13200 908 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 NNTQ13423 1086 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 TMC4Q7Z404 712 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 FAM129BQ96TA1 746 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 MRS2Q9HD23 443 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 COPRSQ9NQ92 184 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.47□□□□□ -2.01
BRCA1-202ENST00000354071 PDZRN3Q9UPQ7 1066 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 HCN4Q9Y3Q4 1203 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 LTBP4Q8N2S1 1624 aa2.47□□□□□ -2.01
BRCA1-202ENST00000354071 NDUFB5O43674 189 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 INHAP05111 366 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 IGFBP4P22692 258 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 NR5A1Q13285 461 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 GGNBP2Q9H3C7 697 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 NDFIP2Q9NV92 336 aa2.46□□□□□ -2.01
BRCA1-202ENST00000354071 CUEDC1Q9NWM3 386 aaPredicted RBP2.46□□□□□ -2.01
BRCA1-202ENST00000354071 PTCD1O75127 700 aaKnown RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 PRPF40AO75400 957 aaKnown RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 FAM13AO94988 1023 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 VASH1Q7L8A9 365 aaPredicted RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 XAGE2Q96GT9 111 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 SCHIP1Q9P0W5 487 aaPredicted RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 STIM2Q9P246 746 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 DMGDHQ9UI17 866 aaKnown RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 DNMT3LQ9UJW3 386 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 BCS1LQ9Y276 419 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 CADPSQ9ULU8 1353 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 ANKRD62A6NC57 917 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 SNRPBP14678 240 aaKnown RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 MZF1P28698 734 aaPredicted RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 ZNF76P36508 570 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 PLCB3Q01970 1234 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 CBLBQ13191 982 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 PDE3BQ13370 1112 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 DGKZQ13574 1117 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 JAZF1Q86VZ6 243 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 EPS8L3Q8TE67 593 aaKnown RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 EDEM1Q92611 657 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 OSBPL7Q9BZF2 842 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 BMP1P13497 986 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 ATP4AP20648 1035 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 GPR152Q8TDT2 470 aa2.46□□□□□ -2.02
BRCA1-202ENST00000354071 IRX2Q9BZI1 471 aaPredicted RBP2.46□□□□□ -2.02
BRCA1-202ENST00000354071 MED1Q15648 1581 aaPredicted RBP2.45□□□□□ -2.02
BRCA1-202ENST00000354071 SPINT1O43278 529 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 DGAT1O75907 488 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 BMS1Q14692 1282 aaKnown RBP2.45□□□□□ -2.02
BRCA1-202ENST00000354071 MCF2L2Q86YR7 1114 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 DHX37Q8IY37 1157 aaKnown RBP2.45□□□□□ -2.02
BRCA1-202ENST00000354071 RNF34Q969K3 372 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 VTI1AQ96AJ9 217 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 CCSER2Q9H7U1 834 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 FOXD3Q9UJU5 478 aaPredicted RBP2.45□□□□□ -2.02
BRCA1-202ENST00000354071 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.45□□□□□ -2.02
BRCA1-202ENST00000354071 CECR2Q9BXF3 1484 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 RBAK-RBAKDNI3L0D1 243 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 FOXO3O43524 673 aa2.45□□□□□ -2.02
BRCA1-202ENST00000354071 MYCP01106 439 aaPredicted RBP2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms