RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 NBPF5PQ86XG9 351 aaPredicted RBP23.32■■□□□ 1.32
HDDC3-201ENST00000330334 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
HDDC3-201ENST00000330334 RNF181Q9P0P0 153 aa23.32■■□□□ 1.32
HDDC3-201ENST00000330334 ZC3H4Q9UPT8 1303 aaKnown RBP23.32■■□□□ 1.32
HDDC3-201ENST00000330334 KLRG2A4D1S0 409 aaPredicted RBP23.31■■□□□ 1.32
HDDC3-201ENST00000330334 SRGNP10124 158 aa23.31■■□□□ 1.32
HDDC3-201ENST00000330334 STYK1Q6J9G0 422 aa23.31■■□□□ 1.32
HDDC3-201ENST00000330334 ZNF622Q969S3 477 aaKnown RBP eCLIP23.31■■□□□ 1.32
HDDC3-201ENST00000330334 NIP7Q9Y221 180 aaKnown RBP eCLIP23.31■■□□□ 1.32
HDDC3-201ENST00000330334 LMNB1P20700 586 aa23.3■■□□□ 1.32
HDDC3-201ENST00000330334 CCDC24Q8N4L8 307 aa23.3■■□□□ 1.32
HDDC3-201ENST00000330334 CNKSR1Q969H4 720 aa23.3■■□□□ 1.32
HDDC3-201ENST00000330334 ADAMTS8Q9UP79 889 aa23.3■■□□□ 1.32
HDDC3-201ENST00000330334 LAMB4A4D0S4 1761 aa23.29■■□□□ 1.32
HDDC3-201ENST00000330334 HLFQ16534 295 aa23.29■■□□□ 1.32
HDDC3-201ENST00000330334 ANKRD31Q8N7Z5 1873 aa23.29■■□□□ 1.32
HDDC3-201ENST00000330334 MASTLQ96GX5 879 aa23.29■■□□□ 1.32
HDDC3-201ENST00000330334 RRP7AQ9Y3A4 280 aaKnown RBP23.29■■□□□ 1.32
HDDC3-201ENST00000330334 CEP350Q5VT06 3117 aa23.29■■□□□ 1.32
HDDC3-201ENST00000330334 MAP3K15Q6ZN16 1313 aa23.28■■□□□ 1.32
HDDC3-201ENST00000330334 TOMM70O94826 608 aa23.27■■□□□ 1.32
HDDC3-201ENST00000330334 ZEB1P37275 1124 aaPredicted RBP23.27■■□□□ 1.32
HDDC3-201ENST00000330334 CCDC146Q8IYE0 955 aa23.27■■□□□ 1.32
HDDC3-201ENST00000330334 KDM2BQ8NHM5 1336 aa23.27■■□□□ 1.32
HDDC3-201ENST00000330334 CHL1O00533 1208 aa23.26■■□□□ 1.31
HDDC3-201ENST00000330334 RASSF7Q02833 373 aa23.26■■□□□ 1.31
HDDC3-201ENST00000330334 KIF6Q6ZMV9 814 aa23.26■■□□□ 1.31
HDDC3-201ENST00000330334 TRIM35Q9UPQ4 493 aa23.26■■□□□ 1.31
HDDC3-201ENST00000330334 SBF1O95248 1867 aa23.26■■□□□ 1.31
HDDC3-201ENST00000330334 NFKBIEO00221 500 aa23.25■■□□□ 1.31
HDDC3-201ENST00000330334 SOGA3Q5TF21 947 aa23.25■■□□□ 1.31
HDDC3-201ENST00000330334 NGEFQ8N5V2 710 aa23.25■■□□□ 1.31
HDDC3-201ENST00000330334 NMRK2Q9NPI5 230 aa23.25■■□□□ 1.31
HDDC3-201ENST00000330334 C21orf2O43822 256 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 MYL6BP14649 208 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 NPR1P16066 1061 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 PRELPP51888 382 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 NEUROD2Q15784 382 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 TTLL7Q6ZT98 887 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 LRP10Q7Z4F1 713 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 NYXQ9GZU5 481 aa23.24■■□□□ 1.31
HDDC3-201ENST00000330334 HSPA6P17066 643 aa23.23■■□□□ 1.31
HDDC3-201ENST00000330334 PDIA6Q15084 440 aa23.23■■□□□ 1.31
HDDC3-201ENST00000330334 PRPF40BQ6NWY9 871 aaKnown RBP23.23■■□□□ 1.31
HDDC3-201ENST00000330334 LTBP3Q9NS15 1303 aa23.23■■□□□ 1.31
HDDC3-201ENST00000330334 GTF2E1P29083 439 aaPredicted RBP23.21■■□□□ 1.31
HDDC3-201ENST00000330334 GIGYF2Q6Y7W6 1299 aaKnown RBP23.21■■□□□ 1.31
HDDC3-201ENST00000330334 C7orf43Q8WVR3 580 aa23.21■■□□□ 1.31
HDDC3-201ENST00000330334 IBTKQ9P2D0 1353 aaPredicted RBP23.21■■□□□ 1.31
HDDC3-201ENST00000330334 COL11A2P13942 1736 aaPredicted RBP23.21■■□□□ 1.31
HDDC3-201ENST00000330334 GLTPD2A6NH11 291 aa23.2■■□□□ 1.3
HDDC3-201ENST00000330334 EIF2S2P20042 333 aaKnown RBP23.2■■□□□ 1.3
HDDC3-201ENST00000330334 ZNF34Q8IZ26 560 aa23.2■■□□□ 1.3
HDDC3-201ENST00000330334 ALDH1B1P30837 517 aa23.19■■□□□ 1.3
HDDC3-201ENST00000330334 RBM46Q8TBY0 533 aaKnown RBP23.19■■□□□ 1.3
HDDC3-201ENST00000330334 TAOK3Q9H2K8 898 aa23.19■■□□□ 1.3
HDDC3-201ENST00000330334 FAM177BA6PVY3 158 aa23.18■■□□□ 1.3
HDDC3-201ENST00000330334 HOXB7P09629 217 aa23.18■■□□□ 1.3
HDDC3-201ENST00000330334 CRY2Q49AN0 593 aa23.18■■□□□ 1.3
HDDC3-201ENST00000330334 CFAP44Q96MT7 982 aa23.18■■□□□ 1.3
HDDC3-201ENST00000330334 ZBTB3Q9H5J0 574 aa23.18■■□□□ 1.3
HDDC3-201ENST00000330334 RRAGCQ9HB90 399 aa23.17■■□□□ 1.3
HDDC3-201ENST00000330334 ZNF219Q9P2Y4 722 aaPredicted RBP23.17■■□□□ 1.3
HDDC3-201ENST00000330334 RIC1Q4ADV7 1423 aa23.16■■□□□ 1.3
HDDC3-201ENST00000330334 UBN2Q6ZU65 1347 aa23.16■■□□□ 1.3
HDDC3-201ENST00000330334 PARP10Q53GL7 1025 aa23.16■■□□□ 1.3
HDDC3-201ENST00000330334 C16orf71Q8IYS4 520 aaPredicted RBP23.16■■□□□ 1.3
HDDC3-201ENST00000330334 DDX21Q9NR30 783 aaKnown RBP eCLIP23.16■■□□□ 1.3
HDDC3-201ENST00000330334 SLX4Q8IY92 1834 aa23.16■■□□□ 1.3
HDDC3-201ENST00000330334 FER1L6Q2WGJ9 1857 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 NUP98P52948 1817 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 PROSER3Q2NL68 480 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 ERFEQ4G0M1 354 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 CCDC93Q567U6 631 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 SUSD4Q5VX71 490 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 DPY19L2Q6NUT2 758 aa23.15■■□□□ 1.3
HDDC3-201ENST00000330334 GPTP24298 496 aa23.14■■□□□ 1.29
HDDC3-201ENST00000330334 HOXA10P31260 410 aaPredicted RBP23.14■■□□□ 1.29
HDDC3-201ENST00000330334 FSTL1Q12841 308 aa23.14■■□□□ 1.29
HDDC3-201ENST00000330334 PPP1R42Q7Z4L9 355 aa23.14■■□□□ 1.29
HDDC3-201ENST00000330334 NUTM1Q86Y26 1132 aa23.14■■□□□ 1.29
HDDC3-201ENST00000330334 LAS1LQ9Y4W2 734 aaKnown RBP23.14■■□□□ 1.29
HDDC3-201ENST00000330334 ARFGEF2Q9Y6D5 1785 aa23.14■■□□□ 1.29
HDDC3-201ENST00000330334 APAF1O14727 1248 aa23.13■■□□□ 1.29
HDDC3-201ENST00000330334 ZNF853P0CG23 659 aa23.13■■□□□ 1.29
HDDC3-201ENST00000330334 VEGFAP15692 232 aaPredicted RBP23.13■■□□□ 1.29
HDDC3-201ENST00000330334 CALD1Q05682 793 aaKnown RBP23.13■■□□□ 1.29
HDDC3-201ENST00000330334 COPS6Q7L5N1 327 aa23.13■■□□□ 1.29
HDDC3-201ENST00000330334 RTKN2Q8IZC4 609 aa23.13■■□□□ 1.29
HDDC3-201ENST00000330334 ABCC12Q96J65 1359 aa23.13■■□□□ 1.29
HDDC3-201ENST00000330334 NTSR2O95665 410 aa23.12■■□□□ 1.29
HDDC3-201ENST00000330334 APLP1P51693 650 aa23.12■■□□□ 1.29
HDDC3-201ENST00000330334 KRT24Q2M2I5 525 aa23.12■■□□□ 1.29
HDDC3-201ENST00000330334 HSP90AB3PQ58FF7 597 aa23.12■■□□□ 1.29
HDDC3-201ENST00000330334 SLC10A5Q5PT55 438 aa23.12■■□□□ 1.29
HDDC3-201ENST00000330334 RNF123Q5XPI4 1314 aa23.11■■□□□ 1.29
HDDC3-201ENST00000330334 ANXA1P04083 346 aa23.11■■□□□ 1.29
HDDC3-201ENST00000330334 XAGE3Q8WTP9 111 aa23.11■■□□□ 1.29
HDDC3-201ENST00000330334 TNRC6CQ9HCJ0 1690 aaKnown RBP23.11■■□□□ 1.29
HDDC3-201ENST00000330334 FKBP4Q02790 459 aaKnown RBP eCLIP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms