RNA–Protein interactions for RNA: ENST00000328560.12

ATP2C1-201, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,484 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-201ENST00000328560 CCDC83Q8IWF9 413 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 GPATCH3Q96I76 525 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 CNPY2Q9Y2B0 182 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 FIBPO43427 364 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 PTMAP06454 111 aaKnown RBP16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 KSR2Q6VAB6 950 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 KLHDC4Q8TBB5 520 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 HOXB7P09629 217 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 ATF3P18847 181 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 PIP4K2AP48426 406 aaPredicted RBP16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 RUFY3Q7L099 469 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 RIC3Q7Z5B4 369 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 RUFY2Q8WXA3 655 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 RAPGEF4Q8WZA2 1011 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 LIMCH1Q9UPQ0 1083 aa16.91■□□□□ 0.3
ATP2C1-201ENST00000328560 G3BP1Q13283 466 aaKnown RBP eCLIP16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 SYAP1Q96A49 352 aaPredicted RBP16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 NLRP2Q9NX02 1062 aa16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 AXIN2Q9Y2T1 843 aa16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 ADCK5Q3MIX3 580 aa16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 BOLA2Q9H3K6 86 aa16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 TSPY26PQ9H489 355 aa16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 XRN1Q8IZH2 1706 aaKnown RBP16.9■□□□□ 0.3
ATP2C1-201ENST00000328560 FAM208AQ9UK61 1670 aaKnown RBP16.89■□□□□ 0.3
ATP2C1-201ENST00000328560 LARGE1O95461 756 aa16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 SUCLG2Q96I99 432 aa16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 HDAC5Q9UQL6 1122 aa16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 BICC1Q9H694 974 aaKnown RBP16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 PXDNLA1KZ92 1463 aa16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 PDRG1Q9NUG6 133 aa16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 CCDC9Q9Y3X0 531 aaKnown RBP16.89■□□□□ 0.29
ATP2C1-201ENST00000328560 VPS37CA5D8V6 355 aaPredicted RBP16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 SYT1P21579 422 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 ARHGEF25Q86VW2 580 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 NECAB1Q8N987 351 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 FAM227BQ96M60 508 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 TCEANC2Q96MN5 208 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 GRM8O00222 908 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 PLCB2Q00722 1185 aa16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.88■□□□□ 0.29
ATP2C1-201ENST00000328560 STX6O43752 255 aa16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 TTC41PQ6P2S7 1318 aa16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 DDX58O95786 925 aaKnown RBP16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 ALDH1L1O75891 902 aa16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 ZSCAN22P10073 491 aaPredicted RBP16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 TTC14Q96N46 770 aa16.87■□□□□ 0.29
ATP2C1-201ENST00000328560 EAF2Q96CJ1 260 aaPredicted RBP16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 TLR7Q9NYK1 1049 aaKnown RBP16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 CYP46A1Q9Y6A2 500 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 ZKSCAN1P17029 563 aaPredicted RBP16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 ERC1Q8IUD2 1116 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 FSD1Q9BTV5 496 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 HYPKQ9NX55 129 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 CHMP3Q9Y3E7 222 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 ADGRL3Q9HAR2 1447 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 GJB2P29033 226 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 LINS1Q8NG48 757 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 LRRC37A3O60309 1634 aa16.86■□□□□ 0.29
ATP2C1-201ENST00000328560 C19orf44Q9H6X5 657 aa16.85■□□□□ 0.29
ATP2C1-201ENST00000328560 RBM8AQ9Y5S9 174 aaKnown RBP16.85■□□□□ 0.29
ATP2C1-201ENST00000328560 PXDNQ92626 1479 aa16.85■□□□□ 0.29
ATP2C1-201ENST00000328560 SASH1O94885 1247 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 NMIQ13287 307 aaPredicted RBP16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 EVI5LQ96CN4 794 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 R3HCC1Q9Y3T6 440 aaKnown RBP16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 NPHP4O75161 1426 aaPredicted RBP16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 NFATC2IPQ8NCF5 419 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 EDC3Q96F86 508 aaKnown RBP16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 MYD88Q99836 296 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 RPAP1Q9BWH6 1393 aaPredicted RBP16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 PHF14O94880 888 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 NEXNQ0ZGT2 675 aa16.84■□□□□ 0.29
ATP2C1-201ENST00000328560 FERMT3Q86UX7 667 aa16.83■□□□□ 0.29
ATP2C1-201ENST00000328560 XAGE3Q8WTP9 111 aa16.83■□□□□ 0.29
ATP2C1-201ENST00000328560 DDX17Q92841 729 aaKnown RBP16.83■□□□□ 0.29
ATP2C1-201ENST00000328560 DNM1Q05193 864 aaKnown RBP16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 MTX1Q13505 466 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 COPS6Q7L5N1 327 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 KAZALD1Q96I82 304 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 PDLIM2Q96JY6 352 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 DDX21Q9NR30 783 aaKnown RBP eCLIP16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 NDUFB9Q9Y6M9 179 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 F13A1P00488 732 aa16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 TATP17735 454 aaPredicted RBP16.83■□□□□ 0.28
ATP2C1-201ENST00000328560 EPB41L2O43491 1005 aaKnown RBP16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 CCDC171Q6TFL3 1326 aa16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 COL9A3Q14050 684 aaPredicted RBP16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 NOL7Q9UMY1 257 aaKnown RBP16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 STK3Q13188 491 aa16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 HSP90AA2PQ14568 343 aaPredicted RBP16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 CREB3L3Q68CJ9 461 aa16.82■□□□□ 0.28
ATP2C1-201ENST00000328560 ZNF790Q6PG37 636 aa16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 USP25Q9UHP3 1055 aa16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 IGKV5-2P06315 115 aa16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 HCLS1P14317 486 aaPredicted RBP16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 ME3Q16798 604 aa16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 CACNA1FO60840 1977 aa16.81■□□□□ 0.28
ATP2C1-201ENST00000328560 A0A0D9SFI3 127 aa16.8■□□□□ 0.28
ATP2C1-201ENST00000328560 FAM173BQ6P4H8 233 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms