RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 FAM200AQ8TCP9 573 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 TCEANC2Q96MN5 208 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 KIAA0232Q92628 1395 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 CAVIN2O95810 425 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 TNNT1P13805 278 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 C16orf45Q96MC5 204 aaPredicted RBP17.31■□□□□ 0.36
TCOF1-201ENST00000323668 PPP1R9BQ96SB3 815 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 IPO7O95373 1038 aaKnown RBP17.31■□□□□ 0.36
TCOF1-201ENST00000323668 NEK1Q96PY6 1258 aa17.31■□□□□ 0.36
TCOF1-201ENST00000323668 RTL1A6NKG5 1358 aa17.3■□□□□ 0.36
TCOF1-201ENST00000323668 ZMYND15Q9H091 742 aa17.3■□□□□ 0.36
TCOF1-201ENST00000323668 PNMA6EA0A0J9YXQ4 647 aa17.3■□□□□ 0.36
TCOF1-201ENST00000323668 CBX1P83916 185 aa17.3■□□□□ 0.36
TCOF1-201ENST00000323668 TMEM63CQ9P1W3 806 aa17.3■□□□□ 0.36
TCOF1-201ENST00000323668 PHAXQ9H814 394 aaKnown RBP17.3■□□□□ 0.36
TCOF1-201ENST00000323668 POGZQ7Z3K3 1410 aa17.29■□□□□ 0.36
TCOF1-201ENST00000323668 XBP1P17861 261 aa17.29■□□□□ 0.36
TCOF1-201ENST00000323668 PKP1Q13835 747 aa17.29■□□□□ 0.36
TCOF1-201ENST00000323668 SYTL4Q96C24 671 aaPredicted RBP17.29■□□□□ 0.36
TCOF1-201ENST00000323668 A0A0U1RQG5 324 aaPredicted RBP17.29■□□□□ 0.36
TCOF1-201ENST00000323668 SMTNL1A8MU46 457 aa17.29■□□□□ 0.36
TCOF1-201ENST00000323668 BRD1O95696 1058 aa17.29■□□□□ 0.36
TCOF1-201ENST00000323668 IMMTQ16891 758 aaKnown RBP17.29■□□□□ 0.36
TCOF1-201ENST00000323668 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.29■□□□□ 0.36
TCOF1-201ENST00000323668 KIF2AO00139 706 aaPredicted RBP17.28■□□□□ 0.36
TCOF1-201ENST00000323668 VPS53Q5VIR6 699 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 KSR2Q6VAB6 950 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 SIRT2Q8IXJ6 389 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 DACT1Q9NYF0 836 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 CLASP1Q7Z460 1538 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 GUCY1B3Q02153 619 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 A0A087WZG4 1122 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 CNNM1Q9NRU3 951 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 NEMFO60524 1076 aa17.28■□□□□ 0.36
TCOF1-201ENST00000323668 PA2G4Q9UQ80 394 aaKnown RBP17.28■□□□□ 0.36
TCOF1-201ENST00000323668 GRM8O00222 908 aa17.27■□□□□ 0.36
TCOF1-201ENST00000323668 CDKL5O76039 1030 aa17.27■□□□□ 0.36
TCOF1-201ENST00000323668 SFPQP23246 707 aaKnown RBP eCLIP17.27■□□□□ 0.36
TCOF1-201ENST00000323668 ZSCAN16Q9H4T2 348 aaPredicted RBP17.27■□□□□ 0.36
TCOF1-201ENST00000323668 IFIT1P09914 478 aaKnown RBP17.27■□□□□ 0.36
TCOF1-201ENST00000323668 KIF18AQ8NI77 898 aa17.27■□□□□ 0.36
TCOF1-201ENST00000323668 PRDM10Q9NQV6 1147 aa17.27■□□□□ 0.36
TCOF1-201ENST00000323668 CBFA2T2O43439 604 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 CCT2P78371 535 aaKnown RBP17.27■□□□□ 0.35
TCOF1-201ENST00000323668 KIF6Q6ZMV9 814 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 AOX1Q06278 1338 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC66A2RUB6 948 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 SGSM2O43147 1006 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 VPS37DQ86XT2 251 aa17.27■□□□□ 0.35
TCOF1-201ENST00000323668 MAP3K5Q99683 1374 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 ZNF853P0CG23 659 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 RRP12Q5JTH9 1297 aaKnown RBP17.26■□□□□ 0.35
TCOF1-201ENST00000323668 ZSCAN25Q6NSZ9 544 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 FSIP1Q8NA03 581 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 C8orf76Q96K31 380 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 CPA1P15085 419 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC186Q7Z3E2 898 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 LINS1Q8NG48 757 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 TRIM22Q8IYM9 498 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 BRF1Q92994 677 aa17.26■□□□□ 0.35
TCOF1-201ENST00000323668 TERF1P54274 439 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 STX1AQ16623 288 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 ANO6Q4KMQ2 910 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 UBE3BQ7Z3V4 1068 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 NPHP3Q7Z494 1330 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 BRMS1Q9HCU9 246 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 NMIQ13287 307 aaPredicted RBP17.25■□□□□ 0.35
TCOF1-201ENST00000323668 CREB3L3Q68CJ9 461 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 RBM33Q96EV2 1170 aaKnown RBP17.25■□□□□ 0.35
TCOF1-201ENST00000323668 BABAM1Q9NWV8 329 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 SNX14Q9Y5W7 946 aa17.25■□□□□ 0.35
TCOF1-201ENST00000323668 PPP4R3BQ5MIZ7 849 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC70Q6NSX1 233 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC47Q96A33 483 aaKnown RBP17.24■□□□□ 0.35
TCOF1-201ENST00000323668 CLTCL1P53675 1640 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 EPB41L2O43491 1005 aaKnown RBP17.24■□□□□ 0.35
TCOF1-201ENST00000323668 AKAP4Q5JQC9 854 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 TET3O43151 1660 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 TYRO3Q06418 890 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 FILIP1LQ4L180 1135 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 RUFY3Q7L099 469 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 PCMTD1Q96MG8 357 aaPredicted RBP17.24■□□□□ 0.35
TCOF1-201ENST00000323668 RAD50Q92878 1312 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 HSPA4P34932 840 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 CCAR1Q8IX12 1150 aaKnown RBP17.24■□□□□ 0.35
TCOF1-201ENST00000323668 ZFYVE16Q7Z3T8 1539 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 LAMC1P11047 1609 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 MAP3K4Q9Y6R4 1608 aa17.24■□□□□ 0.35
TCOF1-201ENST00000323668 CFAP100Q494V2 611 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 MADDQ8WXG6 1647 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 GOLIM4O00461 696 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 GADD45BO75293 160 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-201ENST00000323668 FAM177A1Q8N128 213 aaPredicted RBP17.23■□□□□ 0.35
TCOF1-201ENST00000323668 TRMT1Q9NXH9 659 aaKnown RBP17.23■□□□□ 0.35
TCOF1-201ENST00000323668 DACH1Q9UI36 760 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 KIF1BO60333 1816 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 ANKRD13DQ6ZTN6 518 aa17.23■□□□□ 0.35
TCOF1-201ENST00000323668 HOXC9P31274 260 aa17.22■□□□□ 0.35
TCOF1-201ENST00000323668 CCDC85AQ96PX6 553 aaPredicted RBP17.22■□□□□ 0.35
TCOF1-201ENST00000323668 SHROOM2Q13796 1616 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms