RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PTPN14Q15678 1187 aa18.14■□□□□ 0.5
SHH-201ENST00000297261 SMC5Q8IY18 1101 aa18.14■□□□□ 0.5
SHH-201ENST00000297261 PRIMPOLQ96LW4 560 aa18.14■□□□□ 0.5
SHH-201ENST00000297261 TMEM131LA2VDJ0 1609 aa18.14■□□□□ 0.49
SHH-201ENST00000297261 NBPF6Q5VWK0 638 aa18.14■□□□□ 0.49
SHH-201ENST00000297261 NBPF4Q96M43 638 aa18.14■□□□□ 0.49
SHH-201ENST00000297261 LRRFIP2Q9Y608 721 aaKnown RBP18.14■□□□□ 0.49
SHH-201ENST00000297261 PDE4CQ08493 712 aa18.14■□□□□ 0.49
SHH-201ENST00000297261 DNAAF4Q8WXU2 420 aa18.14■□□□□ 0.49
SHH-201ENST00000297261 APPP05067 770 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 NUCB1Q02818 461 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 CCDC70Q6NSX1 233 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 TRMT1Q9NXH9 659 aaKnown RBP18.13■□□□□ 0.49
SHH-201ENST00000297261 ARHGEF10O15013 1369 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 CASTP20810 708 aaKnown RBP18.13■□□□□ 0.49
SHH-201ENST00000297261 UBXN4Q92575 508 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 PDRG1Q9NUG6 133 aa18.13■□□□□ 0.49
SHH-201ENST00000297261 SPATA31D1Q6ZQQ2 1576 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 TAF3Q5VWG9 929 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 LEKR1Q6ZMV7 388 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 PI4KAP2A4QPH2 592 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 NUTM1Q86Y26 1132 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 PI4KAP1Q8N8J0 262 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 SIL1Q9H173 461 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 PIK3R4Q99570 1358 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 GTF2E1P29083 439 aaPredicted RBP18.12■□□□□ 0.49
SHH-201ENST00000297261 NEUROD6Q96NK8 337 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 CHPF2Q9P2E5 772 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 STK38Q15208 465 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 ACBD3Q9H3P7 528 aa18.12■□□□□ 0.49
SHH-201ENST00000297261 SLC39A6Q13433 755 aa18.11■□□□□ 0.49
SHH-201ENST00000297261 TSHZ3Q63HK5 1081 aa18.11■□□□□ 0.49
SHH-201ENST00000297261 OLFM4Q6UX06 510 aa18.11■□□□□ 0.49
SHH-201ENST00000297261 GIMAP6Q6P9H5 292 aa18.11■□□□□ 0.49
SHH-201ENST00000297261 SERPINC1P01008 464 aa18.11■□□□□ 0.49
SHH-201ENST00000297261 BLOC1S2Q6QNY1 142 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 TMX3Q96JJ7 454 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 PCMTD1Q96MG8 357 aaPredicted RBP18.1■□□□□ 0.49
SHH-201ENST00000297261 ADAMTS13Q76LX8 1427 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 MX1P20591 662 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 TRDNQ13061 729 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 HOOK1Q9UJC3 728 aaKnown RBP18.1■□□□□ 0.49
SHH-201ENST00000297261 CDK12Q9NYV4 1490 aaPredicted RBP18.1■□□□□ 0.49
SHH-201ENST00000297261 ATP2B1P20020 1258 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 AKAP17AQ02040 695 aaKnown RBP18.1■□□□□ 0.49
SHH-201ENST00000297261 G2E3Q7L622 706 aa18.1■□□□□ 0.49
SHH-201ENST00000297261 ZGPATQ8N5A5 531 aaKnown RBP18.1■□□□□ 0.49
SHH-201ENST00000297261 AK7Q96M32 723 aa18.09■□□□□ 0.49
SHH-201ENST00000297261 DLC1Q96QB1 1528 aa18.09■□□□□ 0.49
SHH-201ENST00000297261 RBSNQ9H1K0 784 aa18.09■□□□□ 0.49
SHH-201ENST00000297261 DDX11Q96FC9 970 aa18.09■□□□□ 0.49
SHH-201ENST00000297261 LGR6Q9HBX8 967 aa18.09■□□□□ 0.49
SHH-201ENST00000297261 PATL2C9JE40 543 aaKnown RBP18.08■□□□□ 0.49
SHH-201ENST00000297261 H0YHG0 523 aa18.08■□□□□ 0.49
SHH-201ENST00000297261 ZBTB7BO15156 539 aaPredicted RBP18.08■□□□□ 0.49
SHH-201ENST00000297261 ADAMTS2O95450 1211 aa18.08■□□□□ 0.49
SHH-201ENST00000297261 KIF18AQ8NI77 898 aa18.08■□□□□ 0.49
SHH-201ENST00000297261 BBXQ8WY36 941 aaPredicted RBP18.08■□□□□ 0.49
SHH-201ENST00000297261 POLR3GO15318 223 aaPredicted RBP18.08■□□□□ 0.48
SHH-201ENST00000297261 CEP57L1Q8IYX8 460 aa18.08■□□□□ 0.48
SHH-201ENST00000297261 ANKRD20A12PQ8NF67 263 aa18.08■□□□□ 0.48
SHH-201ENST00000297261 TMEM94Q12767 1356 aa18.08■□□□□ 0.48
SHH-201ENST00000297261 TFIP11Q9UBB9 837 aaKnown RBP18.08■□□□□ 0.48
SHH-201ENST00000297261 CLIP2Q9UDT6 1046 aa18.08■□□□□ 0.48
SHH-201ENST00000297261 RALYLQ86SE5 291 aaKnown RBP18.08■□□□□ 0.48
SHH-201ENST00000297261 MAP3K2Q9Y2U5 619 aa18.08■□□□□ 0.48
SHH-201ENST00000297261 DNAJC2Q99543 621 aaKnown RBP18.07■□□□□ 0.48
SHH-201ENST00000297261 HYPKQ9NX55 129 aa18.07■□□□□ 0.48
SHH-201ENST00000297261 HS1BP3Q53T59 392 aa18.07■□□□□ 0.48
SHH-201ENST00000297261 CPSF1Q10570 1443 aaKnown RBP18.07■□□□□ 0.48
SHH-201ENST00000297261 TMCO3Q6UWJ1 677 aa18.07■□□□□ 0.48
SHH-201ENST00000297261 NFXL1Q6ZNB6 911 aa18.07■□□□□ 0.48
SHH-201ENST00000297261 BRPF1P55201 1214 aaPredicted RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 LARP1Q6PKG0 1096 aaKnown RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 ERC1Q8IUD2 1116 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 CCDC94Q9BW85 323 aaPredicted RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 SDSP20132 328 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 TTC22Q5TAA0 569 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 ANKRD44Q8N8A2 993 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 ZSCAN31Q96LW9 406 aaPredicted RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 MYD88Q99836 296 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 RNMTO43148 476 aaKnown RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 KIF6Q6ZMV9 814 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 ZNF396Q96N95 335 aaPredicted RBP18.06■□□□□ 0.48
SHH-201ENST00000297261 RUFY1Q96T51 708 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 CCP110O43303 1012 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 WASHC4Q2M389 1173 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 DNAJC5Q9H3Z4 198 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 TMOD3Q9NYL9 352 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 MED14O60244 1454 aa18.06■□□□□ 0.48
SHH-201ENST00000297261 C16orf71Q8IYS4 520 aaPredicted RBP18.05■□□□□ 0.48
SHH-201ENST00000297261 NOL7Q9UMY1 257 aaKnown RBP18.05■□□□□ 0.48
SHH-201ENST00000297261 GTF2F1P35269 517 aaKnown RBP eCLIP18.05■□□□□ 0.48
SHH-201ENST00000297261 MEX3CQ5U5Q3 659 aaKnown RBP18.05■□□□□ 0.48
SHH-201ENST00000297261 PRPF40BQ6NWY9 871 aaKnown RBP18.05■□□□□ 0.48
SHH-201ENST00000297261 NFATC2IPQ8NCF5 419 aa18.05■□□□□ 0.48
SHH-201ENST00000297261 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
SHH-201ENST00000297261 PNPLA6Q8IY17 1366 aa18.05■□□□□ 0.48
SHH-201ENST00000297261 STK11IPQ8N1F8 1099 aa18.05■□□□□ 0.48
SHH-201ENST00000297261 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms