RNA–Protein interactions for RNA: ENST00000295927.3

PTX3-201, Transcript of pentraxin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTX3, Length 1,940 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTX3-201ENST00000295927 NEURL1BA8MQ27 555 aa28.47■■■□□ 2.15
PTX3-201ENST00000295927 MYT1Q01538 1121 aa28.47■■■□□ 2.15
PTX3-201ENST00000295927 TTLL7Q6ZT98 887 aa28.47■■■□□ 2.15
PTX3-201ENST00000295927 GRM8O00222 908 aa28.46■■■□□ 2.15
PTX3-201ENST00000295927 UTYO14607 1347 aa28.45■■■□□ 2.15
PTX3-201ENST00000295927 GJD4Q96KN9 370 aaPredicted RBP28.45■■■□□ 2.14
PTX3-201ENST00000295927 PPP1R42Q7Z4L9 355 aa28.43■■■□□ 2.14
PTX3-201ENST00000295927 SSH3Q8TE77 659 aa28.43■■■□□ 2.14
PTX3-201ENST00000295927 HDAC5Q9UQL6 1122 aa28.43■■■□□ 2.14
PTX3-201ENST00000295927 CYP19A1P11511 503 aaPredicted RBP28.43■■■□□ 2.14
PTX3-201ENST00000295927 GCKRQ14397 625 aa28.43■■■□□ 2.14
PTX3-201ENST00000295927 ATRNO75882 1429 aa28.42■■■□□ 2.14
PTX3-201ENST00000295927 ZBTB47Q9UFB7 747 aaPredicted RBP28.42■■■□□ 2.14
PTX3-201ENST00000295927 APBB1O00213 710 aa28.41■■■□□ 2.14
PTX3-201ENST00000295927 KCNQ2O43526 872 aa28.41■■■□□ 2.14
PTX3-201ENST00000295927 POLA2Q14181 598 aa28.41■■■□□ 2.14
PTX3-201ENST00000295927 EXOC6BQ9Y2D4 811 aa28.41■■■□□ 2.14
PTX3-201ENST00000295927 TRPC5Q9UL62 973 aaPredicted RBP28.39■■■□□ 2.14
PTX3-201ENST00000295927 ATP5J2-PTCD1G3V325 749 aa28.39■■■□□ 2.13
PTX3-201ENST00000295927 SRGAP3O43295 1099 aa28.39■■■□□ 2.13
PTX3-201ENST00000295927 SMARCA5O60264 1052 aaPredicted RBP28.39■■■□□ 2.13
PTX3-201ENST00000295927 SUCLG2Q96I99 432 aa28.39■■■□□ 2.13
PTX3-201ENST00000295927 ZBTB3Q9H5J0 574 aa28.39■■■□□ 2.13
PTX3-201ENST00000295927 MTX1Q13505 466 aa28.38■■■□□ 2.13
PTX3-201ENST00000295927 ZNF330Q9Y3S2 320 aaPredicted RBP28.38■■■□□ 2.13
PTX3-201ENST00000295927 KAZALD1Q96I82 304 aa28.37■■■□□ 2.13
PTX3-201ENST00000295927 PALLDQ8WX93 1383 aa28.36■■■□□ 2.13
PTX3-201ENST00000295927 C16orf71Q8IYS4 520 aaPredicted RBP28.36■■■□□ 2.13
PTX3-201ENST00000295927 LOC102724428A0A0B4J2F2 783 aa28.35■■■□□ 2.13
PTX3-201ENST00000295927 SIK1P57059 783 aa28.35■■■□□ 2.13
PTX3-201ENST00000295927 CICQ96RK0 1608 aaPredicted RBP28.35■■■□□ 2.13
PTX3-201ENST00000295927 SMARCC1Q92922 1105 aaPredicted RBP28.35■■■□□ 2.13
PTX3-201ENST00000295927 BCL11AQ9H165 835 aa28.35■■■□□ 2.13
PTX3-201ENST00000295927 ZBTB1Q9Y2K1 713 aa28.35■■■□□ 2.13
PTX3-201ENST00000295927 ONECUT3O60422 494 aaPredicted RBP28.34■■■□□ 2.13
PTX3-201ENST00000295927 ATP6V1AP38606 617 aa28.34■■■□□ 2.13
PTX3-201ENST00000295927 PLEKHM2Q8IWE5 1019 aa28.34■■■□□ 2.13
PTX3-201ENST00000295927 KIF6Q6ZMV9 814 aa28.33■■■□□ 2.13
PTX3-201ENST00000295927 BICC1Q9H694 974 aaKnown RBP28.33■■■□□ 2.13
PTX3-201ENST00000295927 LRRCC1Q9C099 1032 aa28.33■■■□□ 2.13
PTX3-201ENST00000295927 A0A087WZG4 1122 aa28.31■■■□□ 2.12
PTX3-201ENST00000295927 SURF6O75683 361 aaKnown RBP28.31■■■□□ 2.12
PTX3-201ENST00000295927 QTRT2Q9H974 415 aaKnown RBP28.31■■■□□ 2.12
PTX3-201ENST00000295927 UBE3BQ7Z3V4 1068 aa28.31■■■□□ 2.12
PTX3-201ENST00000295927 OTUD7AQ8TE49 926 aaPredicted RBP28.31■■■□□ 2.12
PTX3-201ENST00000295927 JARID2Q92833 1246 aaPredicted RBP28.31■■■□□ 2.12
PTX3-201ENST00000295927 NHSQ6T4R5 1651 aa28.3■■■□□ 2.12
PTX3-201ENST00000295927 ITPK1Q13572 414 aa28.3■■■□□ 2.12
PTX3-201ENST00000295927 CWC25Q9NXE8 425 aaPredicted RBP28.3■■■□□ 2.12
PTX3-201ENST00000295927 IL6STP40189 918 aaPredicted RBP28.3■■■□□ 2.12
PTX3-201ENST00000295927 BMP2KLQ5H9B9 411 aa28.3■■■□□ 2.12
PTX3-201ENST00000295927 FAM182BQ5T319 152 aa28.3■■■□□ 2.12
PTX3-201ENST00000295927 ZNF831Q5JPB2 1677 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 MAP3K15Q6ZN16 1313 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 RREB1Q92766 1687 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 RAB11FIP3O75154 756 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 CASP7P55210 303 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 SEPT12Q8IYM1 358 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 CCDC191Q8NCU4 936 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 ARXQ96QS3 562 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 BTAF1O14981 1849 aa28.29■■■□□ 2.12
PTX3-201ENST00000295927 COL15A1P39059 1388 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 TCIRG1Q13488 830 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 EPHA10Q5JZY3 1008 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 INTS5Q6P9B9 1019 aaKnown RBP28.28■■■□□ 2.12
PTX3-201ENST00000295927 PTF1AQ7RTS3 328 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 ISCA1Q9BUE6 129 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 H7C1W4 665 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 CCDC87Q9NVE4 849 aa28.28■■■□□ 2.12
PTX3-201ENST00000295927 COL5A3P25940 1745 aaPredicted RBP28.27■■■□□ 2.12
PTX3-201ENST00000295927 CRKLP46109 303 aaKnown RBP28.27■■■□□ 2.12
PTX3-201ENST00000295927 NOP58Q9Y2X3 529 aaKnown RBP28.27■■■□□ 2.12
PTX3-201ENST00000295927 SBF2Q86WG5 1849 aa28.26■■■□□ 2.12
PTX3-201ENST00000295927 MYH14Q7Z406 1995 aaKnown RBP28.26■■■□□ 2.12
PTX3-201ENST00000295927 SEC24BO95487 1268 aa28.26■■■□□ 2.11
PTX3-201ENST00000295927 HSP90AB4PQ58FF6 505 aa28.26■■■□□ 2.11
PTX3-201ENST00000295927 GIGYF2Q6Y7W6 1299 aaKnown RBP28.25■■■□□ 2.11
PTX3-201ENST00000295927 NPM2Q86SE8 214 aaKnown RBP28.25■■■□□ 2.11
PTX3-201ENST00000295927 ANKRD36CQ5JPF3 1778 aa28.24■■■□□ 2.11
PTX3-201ENST00000295927 NUP98P52948 1817 aa28.24■■■□□ 2.11
PTX3-201ENST00000295927 EIF5P55010 431 aaKnown RBP28.24■■■□□ 2.11
PTX3-201ENST00000295927 TRIM28Q13263 835 aaKnown RBP28.24■■■□□ 2.11
PTX3-201ENST00000295927 HLFQ16534 295 aa28.24■■■□□ 2.11
PTX3-201ENST00000295927 RHPN1Q8TCX5 695 aa28.24■■■□□ 2.11
PTX3-201ENST00000295927 PA2G4Q9UQ80 394 aaKnown RBP28.24■■■□□ 2.11
PTX3-201ENST00000295927 TTC22Q5TAA0 569 aa28.23■■■□□ 2.11
PTX3-201ENST00000295927 GSPT1P15170 499 aaKnown RBP28.22■■■□□ 2.11
PTX3-201ENST00000295927 RABL6Q3YEC7 729 aaPredicted RBP28.22■■■□□ 2.11
PTX3-201ENST00000295927 DZIP3Q86Y13 1208 aaKnown RBP28.22■■■□□ 2.11
PTX3-201ENST00000295927 KIF1BPQ96EK5 621 aa28.22■■■□□ 2.11
PTX3-201ENST00000295927 ANP32AP39687 249 aaKnown RBP28.22■■■□□ 2.11
PTX3-201ENST00000295927 IL1RAPL2Q9NP60 686 aa28.22■■■□□ 2.11
PTX3-201ENST00000295927 SALL3Q9BXA9 1300 aa28.22■■■□□ 2.11
PTX3-201ENST00000295927 OSBPL3Q9H4L5 887 aa28.21■■■□□ 2.11
PTX3-201ENST00000295927 TBC1D2BQ9UPU7 963 aa28.21■■■□□ 2.11
PTX3-201ENST00000295927 ERVV-1B6SEH8 477 aa28.2■■■□□ 2.11
PTX3-201ENST00000295927 PDE1AP54750 535 aa28.2■■■□□ 2.11
PTX3-201ENST00000295927 OS9Q13438 667 aaPredicted RBP28.2■■■□□ 2.11
PTX3-201ENST00000295927 RTL5Q5HYW3 569 aaPredicted RBP28.2■■■□□ 2.11
PTX3-201ENST00000295927 HSP90AB3PQ58FF7 597 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms