RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 RRP9O43818 475 aaKnown RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 ESCO1Q5FWF5 840 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 KIF1BPQ96EK5 621 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 PDLIM2Q96JY6 352 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 WDR33Q9C0J8 1336 aaKnown RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 AACSQ86V21 672 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 EDC3Q96F86 508 aaKnown RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 FAM227BQ96M60 508 aa10.99□□□□□ -0.65
MSH4-201ENST00000263187 LSG1Q9H089 658 aaKnown RBP10.99□□□□□ -0.65
MSH4-201ENST00000263187 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.99□□□□□ -0.65
MSH4-201ENST00000263187 TTC21AQ8NDW8 1320 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 STX6O43752 255 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 CHGBP05060 677 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 GJB2P29033 226 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 EIF4A1P60842 406 aaKnown RBP10.98□□□□□ -0.65
MSH4-201ENST00000263187 CAMK4Q16566 473 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 BEND3Q5T5X7 828 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 XIRP1Q702N8 1843 aaKnown RBP10.98□□□□□ -0.65
MSH4-201ENST00000263187 TECPR2O15040 1411 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 IFIT2P09913 472 aaKnown RBP10.98□□□□□ -0.65
MSH4-201ENST00000263187 FOSBP53539 338 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 SPC24Q8NBT2 197 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 BOLA2Q9H3K6 86 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 TAF6LQ9Y6J9 622 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 KDRP35968 1356 aa10.98□□□□□ -0.65
MSH4-201ENST00000263187 MYL6BP14649 208 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 HSPA2P54652 639 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 ANAPC15P60006 121 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 PSME1Q06323 249 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 TLR7Q9NYK1 1049 aaKnown RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 RAD50Q92878 1312 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 TPM2P07951 284 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 ZSCAN22P10073 491 aaPredicted RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 SLC39A6Q13433 755 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 AEBP2Q6ZN18 517 aaPredicted RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 CLASRPQ8N2M8 674 aaKnown RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 INTS4Q96HW7 963 aaKnown RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 LIMCH1Q9UPQ0 1083 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 RPAP1Q9BWH6 1393 aaPredicted RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 GLIPR1L2Q4G1C9 344 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 ANKLE2Q86XL3 938 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 SYAP1Q96A49 352 aaPredicted RBP10.97□□□□□ -0.65
MSH4-201ENST00000263187 PDRG1Q9NUG6 133 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 CCDC39Q9UFE4 941 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 TAOK2Q9UL54 1235 aa10.97□□□□□ -0.65
MSH4-201ENST00000263187 ADCY5O95622 1261 aa10.96□□□□□ -0.65
MSH4-201ENST00000263187 TCHHQ07283 1943 aa10.96□□□□□ -0.65
MSH4-201ENST00000263187 AKAP12Q02952 1782 aa10.96□□□□□ -0.66
MSH4-201ENST00000263187 ZMYND15Q9H091 742 aa10.96□□□□□ -0.66
MSH4-201ENST00000263187 TFIP11Q9UBB9 837 aaKnown RBP10.96□□□□□ -0.66
MSH4-201ENST00000263187 POLA2Q14181 598 aa10.96□□□□□ -0.66
MSH4-201ENST00000263187 SSH2Q76I76 1423 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 RAB11FIP3O75154 756 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 NRKQ7Z2Y5 1582 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 F13A1P00488 732 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 TTC14Q96N46 770 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 HYPKQ9NX55 129 aa10.95□□□□□ -0.66
MSH4-201ENST00000263187 RGPD8O14715 1765 aaPredicted RBP10.95□□□□□ -0.66
MSH4-201ENST00000263187 ME3Q16798 604 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 PHF8Q9UPP1 1060 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 HTATSF1O43719 755 aaKnown RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 NMIQ13287 307 aaPredicted RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 CKAP2LQ8IYA6 745 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 LTBP4Q8N2S1 1624 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 CEBPZQ03701 1054 aaKnown RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 EAF2Q96CJ1 260 aaPredicted RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 SUCLG2Q96I99 432 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 LRRC2Q9BYS8 371 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 BICC1Q9H694 974 aaKnown RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 ECHDC1Q9NTX5 307 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 RBM8AQ9Y5S9 174 aaKnown RBP10.94□□□□□ -0.66
MSH4-201ENST00000263187 CYP46A1Q9Y6A2 500 aa10.94□□□□□ -0.66
MSH4-201ENST00000263187 ZNF500O60304 480 aaPredicted RBP10.93□□□□□ -0.66
MSH4-201ENST00000263187 GLRX3O76003 335 aaKnown RBP10.93□□□□□ -0.66
MSH4-201ENST00000263187 C1orf141Q5JVX7 400 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 CCDC183Q5T5S1 534 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 DDX11Q96FC9 970 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 FSD1Q9BTV5 496 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 TPCN1Q9ULQ1 816 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.93□□□□□ -0.66
MSH4-201ENST00000263187 ADCY9O60503 1353 aa10.93□□□□□ -0.66
MSH4-201ENST00000263187 ZC3H6P61129 1189 aaKnown RBP10.93□□□□□ -0.66
MSH4-201ENST00000263187 A0A0D9SFI3 127 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 AP5Z1O43299 807 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 PHF14O94880 888 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 KIAA2012Q0VF49 1180 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 SLFNL1Q499Z3 407 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 LARP1BQ659C4 914 aaKnown RBP10.92□□□□□ -0.66
MSH4-201ENST00000263187 CDC37L1Q7L3B6 337 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 ORAI2Q96SN7 254 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 TBX22Q9Y458 520 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 ST3GAL1Q11201 340 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 G3BP1Q13283 466 aaKnown RBP eCLIP10.92□□□□□ -0.66
MSH4-201ENST00000263187 NAP1L2Q9ULW6 460 aaPredicted RBP10.92□□□□□ -0.66
MSH4-201ENST00000263187 MTMR6Q9Y217 621 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 CCDC129Q6ZRS4 1044 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 RIC3Q7Z5B4 369 aa10.92□□□□□ -0.66
MSH4-201ENST00000263187 SASH1O94885 1247 aa10.91□□□□□ -0.66
MSH4-201ENST00000263187 UBE2HP62256 183 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms