RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 KIF13AQ9H1H9 1805 aa25.7■■□□□ 1.7
TRIM28-201ENST00000253024 CABLES1Q8TDN4 633 aa25.69■■□□□ 1.7
TRIM28-201ENST00000253024 SUCLG2Q96I99 432 aa25.69■■□□□ 1.7
TRIM28-201ENST00000253024 BICC1Q9H694 974 aaKnown RBP25.69■■□□□ 1.7
TRIM28-201ENST00000253024 FMN2Q9NZ56 1722 aa25.69■■□□□ 1.7
TRIM28-201ENST00000253024 PLEKHO1Q53GL0 409 aaPredicted RBP25.69■■□□□ 1.7
TRIM28-201ENST00000253024 RNMTO43148 476 aaKnown RBP25.68■■□□□ 1.7
TRIM28-201ENST00000253024 SMC3Q9UQE7 1217 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 RAD50Q92878 1312 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 NALCNQ8IZF0 1738 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 NLRP2Q9NX02 1062 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 RAB11FIP3O75154 756 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 MCM2P49736 904 aa25.68■■□□□ 1.7
TRIM28-201ENST00000253024 DBF4Q9UBU7 674 aaPredicted RBP25.68■■□□□ 1.7
TRIM28-201ENST00000253024 SYT1P21579 422 aa25.67■■□□□ 1.7
TRIM28-201ENST00000253024 RIC3Q7Z5B4 369 aa25.67■■□□□ 1.7
TRIM28-201ENST00000253024 NWD1Q149M9 1564 aa25.66■■□□□ 1.7
TRIM28-201ENST00000253024 FOSBP53539 338 aa25.66■■□□□ 1.7
TRIM28-201ENST00000253024 GIGYF1O75420 1035 aaPredicted RBP25.66■■□□□ 1.7
TRIM28-201ENST00000253024 ANAPC15P60006 121 aa25.65■■□□□ 1.7
TRIM28-201ENST00000253024 EAF2Q96CJ1 260 aaPredicted RBP25.65■■□□□ 1.7
TRIM28-201ENST00000253024 AKAP4Q5JQC9 854 aa25.65■■□□□ 1.7
TRIM28-201ENST00000253024 C17orf53Q8N3J3 647 aaPredicted RBP25.65■■□□□ 1.7
TRIM28-201ENST00000253024 USP25Q9UHP3 1055 aa25.65■■□□□ 1.7
TRIM28-201ENST00000253024 DNM1Q05193 864 aaKnown RBP25.65■■□□□ 1.7
TRIM28-201ENST00000253024 TAOK2Q9UL54 1235 aa25.65■■□□□ 1.7
TRIM28-201ENST00000253024 PXDNQ92626 1479 aa25.64■■□□□ 1.7
TRIM28-201ENST00000253024 HCLS1P14317 486 aaPredicted RBP25.64■■□□□ 1.7
TRIM28-201ENST00000253024 GJB2P29033 226 aa25.64■■□□□ 1.7
TRIM28-201ENST00000253024 TSPY26PQ9H489 355 aa25.64■■□□□ 1.7
TRIM28-201ENST00000253024 ATP5J2-PTCD1G3V325 749 aa25.64■■□□□ 1.69
TRIM28-201ENST00000253024 PTCD1O75127 700 aaKnown RBP25.64■■□□□ 1.69
TRIM28-201ENST00000253024 CHRNA2Q15822 529 aa25.64■■□□□ 1.69
TRIM28-201ENST00000253024 ECHDC1Q9NTX5 307 aa25.64■■□□□ 1.69
TRIM28-201ENST00000253024 TCHHQ07283 1943 aa25.64■■□□□ 1.69
TRIM28-201ENST00000253024 GIMAP6Q6P9H5 292 aa25.63■■□□□ 1.69
TRIM28-201ENST00000253024 NFATC2IPQ8NCF5 419 aa25.63■■□□□ 1.69
TRIM28-201ENST00000253024 PDRG1Q9NUG6 133 aa25.63■■□□□ 1.69
TRIM28-201ENST00000253024 WDR33Q9C0J8 1336 aaKnown RBP25.63■■□□□ 1.69
TRIM28-201ENST00000253024 STX6O43752 255 aa25.63■■□□□ 1.69
TRIM28-201ENST00000253024 GLRX3O76003 335 aaKnown RBP25.63■■□□□ 1.69
TRIM28-201ENST00000253024 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.63■■□□□ 1.69
TRIM28-201ENST00000253024 NMIQ13287 307 aaPredicted RBP25.62■■□□□ 1.69
TRIM28-201ENST00000253024 SLFNL1Q499Z3 407 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 LIMCH1Q9UPQ0 1083 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 RPAP1Q9BWH6 1393 aaPredicted RBP25.62■■□□□ 1.69
TRIM28-201ENST00000253024 MBD3O95983 291 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 G3BP1Q13283 466 aaKnown RBP eCLIP25.62■■□□□ 1.694e-9■■□□□ 13
TRIM28-201ENST00000253024 HSP90AA2PQ14568 343 aaPredicted RBP25.62■■□□□ 1.69
TRIM28-201ENST00000253024 ANKLE2Q86XL3 938 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 FSD1Q9BTV5 496 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 SASH1O94885 1247 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 MYD88Q99836 296 aa25.62■■□□□ 1.69
TRIM28-201ENST00000253024 CSB-PGBD3P0DP91 1061 aa25.61■■□□□ 1.69
TRIM28-201ENST00000253024 EPHA10Q5JZY3 1008 aa25.61■■□□□ 1.69
TRIM28-201ENST00000253024 KAZALD1Q96I82 304 aa25.61■■□□□ 1.69
TRIM28-201ENST00000253024 CEMIPQ8WUJ3 1361 aa25.61■■□□□ 1.69
TRIM28-201ENST00000253024 XRN1Q8IZH2 1706 aaKnown RBP25.61■■□□□ 1.69
TRIM28-201ENST00000253024 KSR2Q6VAB6 950 aa25.61■■□□□ 1.69
TRIM28-201ENST00000253024 INTS4Q96HW7 963 aaKnown RBP25.6■■□□□ 1.69
TRIM28-201ENST00000253024 RBM8AQ9Y5S9 174 aaKnown RBP25.6■■□□□ 1.69
TRIM28-201ENST00000253024 FAM208AQ9UK61 1670 aaKnown RBP25.6■■□□□ 1.69
TRIM28-201ENST00000253024 A0A0D9SFI3 127 aa25.6■■□□□ 1.69
TRIM28-201ENST00000253024 TTC14Q96N46 770 aa25.6■■□□□ 1.69
TRIM28-201ENST00000253024 GRM8O00222 908 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 ZSCAN22P10073 491 aaPredicted RBP25.59■■□□□ 1.69
TRIM28-201ENST00000253024 CAMK4Q16566 473 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 ME3Q16798 604 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 COPS6Q7L5N1 327 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 XAGE3Q8WTP9 111 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 LRRC2Q9BYS8 371 aa25.59■■□□□ 1.69
TRIM28-201ENST00000253024 CCDC129Q6ZRS4 1044 aa25.58■■□□□ 1.69
TRIM28-201ENST00000253024 DNAJC2Q99543 621 aaKnown RBP25.58■■□□□ 1.69
TRIM28-201ENST00000253024 HYPKQ9NX55 129 aa25.58■■□□□ 1.69
TRIM28-201ENST00000253024 TFIP11Q9UBB9 837 aaKnown RBP25.57■■□□□ 1.68
TRIM28-201ENST00000253024 ZNF589Q86UQ0 364 aaPredicted RBP25.56■■□□□ 1.68
TRIM28-201ENST00000253024 FAM13BQ9NYF5 915 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 SEC62Q99442 399 aaKnown RBP25.56■■□□□ 1.68
TRIM28-201ENST00000253024 ZNF330Q9Y3S2 320 aaPredicted RBP25.56■■□□□ 1.68
TRIM28-201ENST00000253024 USP16Q9Y5T5 823 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 CYP46A1Q9Y6A2 500 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 IGKV5-2P06315 115 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 DNTTIP2Q5QJE6 756 aaKnown RBP25.56■■□□□ 1.68
TRIM28-201ENST00000253024 KCNH5Q8NCM2 988 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 TTC12Q9H892 705 aaPredicted RBP25.56■■□□□ 1.68
TRIM28-201ENST00000253024 TPCN1Q9ULQ1 816 aa25.56■■□□□ 1.68
TRIM28-201ENST00000253024 HSP90AB4PQ58FF6 505 aa25.55■■□□□ 1.68
TRIM28-201ENST00000253024 ARHGEF25Q86VW2 580 aa25.55■■□□□ 1.68
TRIM28-201ENST00000253024 RGPD2P0DJD1 1756 aa25.55■■□□□ 1.68
TRIM28-201ENST00000253024 F13A1P00488 732 aa25.55■■□□□ 1.68
TRIM28-201ENST00000253024 ST3GAL1Q11201 340 aa25.54■■□□□ 1.68
TRIM28-201ENST00000253024 KRT28Q7Z3Y7 464 aa25.54■■□□□ 1.68
TRIM28-201ENST00000253024 GPATCH3Q96I76 525 aa25.54■■□□□ 1.68
TRIM28-201ENST00000253024 CREB3L3Q68CJ9 461 aa25.54■■□□□ 1.68
TRIM28-201ENST00000253024 UBE3BQ7Z3V4 1068 aa25.54■■□□□ 1.68
TRIM28-201ENST00000253024 NAP1L2Q9ULW6 460 aaPredicted RBP25.54■■□□□ 1.68
TRIM28-201ENST00000253024 DDX11Q96FC9 970 aa25.53■■□□□ 1.68
TRIM28-201ENST00000253024 SYAP1Q96A49 352 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-201ENST00000253024 ZNF496Q96IT1 587 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-201ENST00000253024 CEBPZQ03701 1054 aaKnown RBP25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms