RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 UTYO14607 1347 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 PNMA6EA0A0J9YXQ4 647 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 GRM8O00222 908 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 IGKV5-2P06315 115 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 FAM182BQ5T319 152 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 MYD88Q99836 296 aa22.57■■□□□ 1.2
VIM-201ENST00000224237 TRPC5Q9UL62 973 aaPredicted RBP22.57■■□□□ 1.2
VIM-201ENST00000224237 NEURL1BA8MQ27 555 aa22.56■■□□□ 1.2
VIM-201ENST00000224237 NUP188Q5SRE5 1749 aa22.56■■□□□ 1.2
VIM-201ENST00000224237 SSH3Q8TE77 659 aa22.55■■□□□ 1.2
VIM-201ENST00000224237 TJP1Q07157 1748 aa22.55■■□□□ 1.2
VIM-201ENST00000224237 AFDNP55196 1824 aaKnown RBP22.54■■□□□ 1.2
VIM-201ENST00000224237 TTLL7Q6ZT98 887 aa22.54■■□□□ 1.2
VIM-201ENST00000224237 GCKRQ14397 625 aa22.54■■□□□ 1.2
VIM-201ENST00000224237 PTF1AQ7RTS3 328 aa22.54■■□□□ 1.2
VIM-201ENST00000224237 PPP1R42Q7Z4L9 355 aa22.54■■□□□ 1.2
VIM-201ENST00000224237 QTRT2Q9H974 415 aaKnown RBP22.54■■□□□ 1.2
VIM-201ENST00000224237 MTX1Q13505 466 aa22.53■■□□□ 1.2
VIM-201ENST00000224237 POLA2Q14181 598 aa22.53■■□□□ 1.2
VIM-201ENST00000224237 SRGAP3O43295 1099 aa22.51■■□□□ 1.19
VIM-201ENST00000224237 ZNF330Q9Y3S2 320 aaPredicted RBP22.51■■□□□ 1.19
VIM-201ENST00000224237 CICQ96RK0 1608 aaPredicted RBP22.51■■□□□ 1.19
VIM-201ENST00000224237 CYP19A1P11511 503 aaPredicted RBP22.51■■□□□ 1.19
VIM-201ENST00000224237 EXOC6BQ9Y2D4 811 aa22.51■■□□□ 1.19
VIM-201ENST00000224237 PALLDQ8WX93 1383 aa22.5■■□□□ 1.19
VIM-201ENST00000224237 SEPT12Q8IYM1 358 aa22.5■■□□□ 1.19
VIM-201ENST00000224237 ONECUT3O60422 494 aaPredicted RBP22.49■■□□□ 1.19
VIM-201ENST00000224237 APBB1O00213 710 aa22.49■■□□□ 1.19
VIM-201ENST00000224237 SMARCC1Q92922 1105 aaPredicted RBP22.49■■□□□ 1.19
VIM-201ENST00000224237 LRRCC1Q9C099 1032 aa22.49■■□□□ 1.19
VIM-201ENST00000224237 LOC102724428A0A0B4J2F2 783 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 SIK1P57059 783 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 BMP2KLQ5H9B9 411 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 SUCLG2Q96I99 432 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 ZBTB3Q9H5J0 574 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 ZBTB1Q9Y2K1 713 aa22.48■■□□□ 1.19
VIM-201ENST00000224237 KIF6Q6ZMV9 814 aa22.47■■□□□ 1.19
VIM-201ENST00000224237 ATP5J2-PTCD1G3V325 749 aa22.47■■□□□ 1.19
VIM-201ENST00000224237 SMARCA5O60264 1052 aaPredicted RBP22.47■■□□□ 1.19
VIM-201ENST00000224237 RAB11FIP3O75154 756 aa22.47■■□□□ 1.19
VIM-201ENST00000224237 PLEKHM2Q8IWE5 1019 aa22.47■■□□□ 1.19
VIM-201ENST00000224237 COL15A1P39059 1388 aa22.47■■□□□ 1.19
VIM-201ENST00000224237 ATP6V1AP38606 617 aa22.46■■□□□ 1.19
VIM-201ENST00000224237 ANP32AP39687 249 aaKnown RBP22.46■■□□□ 1.19
VIM-201ENST00000224237 ITPK1Q13572 414 aa22.46■■□□□ 1.19
VIM-201ENST00000224237 KAZALD1Q96I82 304 aa22.46■■□□□ 1.19
VIM-201ENST00000224237 BICC1Q9H694 974 aaKnown RBP22.46■■□□□ 1.19
VIM-201ENST00000224237 HSP90AB4PQ58FF6 505 aa22.45■■□□□ 1.19
VIM-201ENST00000224237 NHSQ6T4R5 1651 aa22.45■■□□□ 1.18
VIM-201ENST00000224237 BTAF1O14981 1849 aa22.45■■□□□ 1.18
VIM-201ENST00000224237 SURF6O75683 361 aaKnown RBP22.45■■□□□ 1.18
VIM-201ENST00000224237 CWC25Q9NXE8 425 aaPredicted RBP22.45■■□□□ 1.18
VIM-201ENST00000224237 ZNF831Q5JPB2 1677 aa22.44■■□□□ 1.18
VIM-201ENST00000224237 A0A087WZG4 1122 aa22.44■■□□□ 1.18
VIM-201ENST00000224237 IL6STP40189 918 aaPredicted RBP22.44■■□□□ 1.18
VIM-201ENST00000224237 CCDC191Q8NCU4 936 aa22.44■■□□□ 1.18
VIM-201ENST00000224237 C16orf71Q8IYS4 520 aaPredicted RBP22.43■■□□□ 1.18
VIM-201ENST00000224237 JARID2Q92833 1246 aaPredicted RBP22.43■■□□□ 1.18
VIM-201ENST00000224237 MAP3K15Q6ZN16 1313 aa22.43■■□□□ 1.18
VIM-201ENST00000224237 UBE3BQ7Z3V4 1068 aa22.43■■□□□ 1.18
VIM-201ENST00000224237 BCL11AQ9H165 835 aa22.43■■□□□ 1.18
VIM-201ENST00000224237 NOP58Q9Y2X3 529 aaKnown RBP22.43■■□□□ 1.18
VIM-201ENST00000224237 RREB1Q92766 1687 aa22.42■■□□□ 1.18
VIM-201ENST00000224237 KCNQ4P56696 695 aa22.42■■□□□ 1.18
VIM-201ENST00000224237 NPM2Q86SE8 214 aaKnown RBP22.42■■□□□ 1.18
VIM-201ENST00000224237 ARXQ96QS3 562 aa22.42■■□□□ 1.18
VIM-201ENST00000224237 SBF2Q86WG5 1849 aa22.42■■□□□ 1.18
VIM-201ENST00000224237 EP400Q96L91 3159 aa22.42■■□□□ 1.18
VIM-201ENST00000224237 BRWD3Q6RI45 1802 aa22.41■■□□□ 1.18
VIM-201ENST00000224237 TCIRG1Q13488 830 aa22.41■■□□□ 1.18
VIM-201ENST00000224237 KIF1BPQ96EK5 621 aa22.41■■□□□ 1.18
VIM-201ENST00000224237 CRKLP46109 303 aaKnown RBP22.41■■□□□ 1.18
VIM-201ENST00000224237 CASP7P55210 303 aa22.41■■□□□ 1.18
VIM-201ENST00000224237 INTS5Q6P9B9 1019 aaKnown RBP22.41■■□□□ 1.18
VIM-201ENST00000224237 OTUD7AQ8TE49 926 aaPredicted RBP22.41■■□□□ 1.18
VIM-201ENST00000224237 ISCA1Q9BUE6 129 aa22.41■■□□□ 1.18
VIM-201ENST00000224237 MYH14Q7Z406 1995 aaKnown RBP22.4■■□□□ 1.18
VIM-201ENST00000224237 H7C1W4 665 aa22.4■■□□□ 1.18
VIM-201ENST00000224237 TTC22Q5TAA0 569 aa22.4■■□□□ 1.18
VIM-201ENST00000224237 OSBPL3Q9H4L5 887 aa22.4■■□□□ 1.18
VIM-201ENST00000224237 CCDC87Q9NVE4 849 aa22.4■■□□□ 1.18
VIM-201ENST00000224237 TRIM28Q13263 835 aaKnown RBP22.39■■□□□ 1.18
VIM-201ENST00000224237 RABL6Q3YEC7 729 aaPredicted RBP22.39■■□□□ 1.18
VIM-201ENST00000224237 HSP90AB3PQ58FF7 597 aa22.39■■□□□ 1.18
VIM-201ENST00000224237 GIGYF2Q6Y7W6 1299 aaKnown RBP22.39■■□□□ 1.18
VIM-201ENST00000224237 RHPN1Q8TCX5 695 aa22.39■■□□□ 1.18
VIM-201ENST00000224237 COL5A3P25940 1745 aaPredicted RBP22.39■■□□□ 1.18
VIM-201ENST00000224237 GSPT1P15170 499 aaKnown RBP22.38■■□□□ 1.17
VIM-201ENST00000224237 EPHA10Q5JZY3 1008 aa22.38■■□□□ 1.17
VIM-201ENST00000224237 ERC1Q8IUD2 1116 aa22.38■■□□□ 1.17
VIM-201ENST00000224237 SALL3Q9BXA9 1300 aa22.38■■□□□ 1.17
VIM-201ENST00000224237 ANKRD36CQ5JPF3 1778 aa22.38■■□□□ 1.17
VIM-201ENST00000224237 ERVV-1B6SEH8 477 aa22.37■■□□□ 1.17
VIM-201ENST00000224237 SEC24BO95487 1268 aa22.37■■□□□ 1.17
VIM-201ENST00000224237 PDE1AP54750 535 aa22.37■■□□□ 1.17
VIM-201ENST00000224237 OS9Q13438 667 aaPredicted RBP22.37■■□□□ 1.17
VIM-201ENST00000224237 UPF2Q9HAU5 1272 aaKnown RBP22.37■■□□□ 1.17
VIM-201ENST00000224237 EIF5P55010 431 aaKnown RBP22.37■■□□□ 1.17
VIM-201ENST00000224237 HLFQ16534 295 aa22.37■■□□□ 1.17
VIM-201ENST00000224237 LINC00116Q8NCU8 138 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms