RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 HOXB7P09629 217 aa17.66■□□□□ 0.42
CNOT3-201ENST00000221232 CCDC173Q0VFZ6 552 aa17.66■□□□□ 0.42
CNOT3-201ENST00000221232 HSP90AB4PQ58FF6 505 aa17.66■□□□□ 0.42
CNOT3-201ENST00000221232 BOLA2Q9H3K6 86 aa17.66■□□□□ 0.42
CNOT3-201ENST00000221232 TLR7Q9NYK1 1049 aaKnown RBP17.66■□□□□ 0.42
CNOT3-201ENST00000221232 CSB-PGBD3P0DP91 1061 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 KCNJ4P48050 445 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 RAD50Q92878 1312 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 LARGE1O95461 756 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 CHRNA2Q15822 529 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 FAM227BQ96M60 508 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 ECHDC1Q9NTX5 307 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 AOX1Q06278 1338 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 G3BP1Q13283 466 aaKnown RBP eCLIP17.65■□□□□ 0.421e-5■■■■□ 21.3
CNOT3-201ENST00000221232 RUFY3Q7L099 469 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 USP48Q86UV5 1035 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 KAZALD1Q96I82 304 aa17.65■□□□□ 0.42
CNOT3-201ENST00000221232 JAKMIP1Q96N16 626 aaKnown RBP17.65■□□□□ 0.42
CNOT3-201ENST00000221232 MARF1Q9Y4F3 1742 aaKnown RBP17.64■□□□□ 0.42
CNOT3-201ENST00000221232 GRM8O00222 908 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 LRRC37A3O60309 1634 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 COL9A3Q14050 684 aaPredicted RBP17.64■□□□□ 0.41
CNOT3-201ENST00000221232 MPNDQ8N594 471 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 EAF2Q96CJ1 260 aaPredicted RBP17.64■□□□□ 0.41
CNOT3-201ENST00000221232 TCEANC2Q96MN5 208 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 SASH1O94885 1247 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 CCDC83Q8IWF9 413 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 RAPGEF4Q8WZA2 1011 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 NDUFB9Q9Y6M9 179 aa17.64■□□□□ 0.41
CNOT3-201ENST00000221232 COPS6Q7L5N1 327 aa17.63■□□□□ 0.41
CNOT3-201ENST00000221232 EDC3Q96F86 508 aaKnown RBP17.63■□□□□ 0.41
CNOT3-201ENST00000221232 INTS4Q96HW7 963 aaKnown RBP17.63■□□□□ 0.41
CNOT3-201ENST00000221232 XAGE3Q8WTP9 111 aa17.63■□□□□ 0.41
CNOT3-201ENST00000221232 MYD88Q99836 296 aa17.63■□□□□ 0.41
CNOT3-201ENST00000221232 CNPY2Q9Y2B0 182 aa17.63■□□□□ 0.41
CNOT3-201ENST00000221232 NECAB1Q8N987 351 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 HYPKQ9NX55 129 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 LTN1O94822 1766 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 RGPD2P0DJD1 1756 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 NFAT5O94916 1531 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 PXDNLA1KZ92 1463 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 IGKV5-2P06315 115 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 PDIA6Q15084 440 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 ZNF790Q6PG37 636 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 LINS1Q8NG48 757 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 PPP1R9BQ96SB3 815 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 CHMP4AQ9BY43 222 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 USP16Q9Y5T5 823 aa17.62■□□□□ 0.41
CNOT3-201ENST00000221232 ALDH1L1O75891 902 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 EPHA10Q5JZY3 1008 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 LRSAM1Q6UWE0 723 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 DDX21Q9NR30 783 aaKnown RBP eCLIP17.61■□□□□ 0.41
CNOT3-201ENST00000221232 LIMCH1Q9UPQ0 1083 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 SMC3Q9UQE7 1217 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 ATP5J2-PTCD1G3V325 749 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 PTCD1O75127 700 aaKnown RBP17.61■□□□□ 0.41
CNOT3-201ENST00000221232 DDX58O95786 925 aaKnown RBP17.61■□□□□ 0.41
CNOT3-201ENST00000221232 GPATCH3Q96I76 525 aa17.61■□□□□ 0.41
CNOT3-201ENST00000221232 ADGRL3Q9HAR2 1447 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 ZNF496Q96IT1 587 aaPredicted RBP17.6■□□□□ 0.41
CNOT3-201ENST00000221232 TTC14Q96N46 770 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 PDRG1Q9NUG6 133 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 WDR33Q9C0J8 1336 aaKnown RBP17.6■□□□□ 0.41
CNOT3-201ENST00000221232 FIBPO43427 364 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 SYT1P21579 422 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 NMIQ13287 307 aaPredicted RBP17.6■□□□□ 0.41
CNOT3-201ENST00000221232 RUFY2Q8WXA3 655 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 PODXL2Q9NZ53 605 aa17.6■□□□□ 0.41
CNOT3-201ENST00000221232 TTC41PQ6P2S7 1318 aa17.59■□□□□ 0.41
CNOT3-201ENST00000221232 CHGBP05060 677 aa17.59■□□□□ 0.41
CNOT3-201ENST00000221232 FSD1Q9BTV5 496 aa17.58■□□□□ 0.41
CNOT3-201ENST00000221232 MBD3O95983 291 aa17.58■□□□□ 0.4
CNOT3-201ENST00000221232 MSNP26038 577 aaKnown RBP17.58■□□□□ 0.4
CNOT3-201ENST00000221232 MTX1Q13505 466 aa17.58■□□□□ 0.4
CNOT3-201ENST00000221232 RBM8AQ9Y5S9 174 aaKnown RBP17.58■□□□□ 0.4
CNOT3-201ENST00000221232 TAF6LQ9Y6J9 622 aa17.58■□□□□ 0.4
CNOT3-201ENST00000221232 NEXNQ0ZGT2 675 aa17.58■□□□□ 0.4
CNOT3-201ENST00000221232 EVI5LQ96CN4 794 aa17.58■□□□□ 0.4
CNOT3-201ENST00000221232 ERBB3P21860 1342 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 VPS37CA5D8V6 355 aaPredicted RBP17.57■□□□□ 0.4
CNOT3-201ENST00000221232 STX6O43752 255 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 GJB2P29033 226 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 ERC1Q8IUD2 1116 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 CHMP3Q9Y3E7 222 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 A0A0D9SFI3 127 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 TATP17735 454 aaPredicted RBP17.57■□□□□ 0.4
CNOT3-201ENST00000221232 CYP46A1Q9Y6A2 500 aa17.57■□□□□ 0.4
CNOT3-201ENST00000221232 RPAP1Q9BWH6 1393 aaPredicted RBP17.56■□□□□ 0.4
CNOT3-201ENST00000221232 ZSCAN22P10073 491 aaPredicted RBP17.56■□□□□ 0.4
CNOT3-201ENST00000221232 ZSCAN30Q86W11 494 aa17.56■□□□□ 0.4
CNOT3-201ENST00000221232 SLC52A2Q9HAB3 445 aa17.56■□□□□ 0.4
CNOT3-201ENST00000221232 NEURL1BA8MQ27 555 aa17.56■□□□□ 0.4
CNOT3-201ENST00000221232 LARP1Q6PKG0 1096 aaKnown RBP17.56■□□□□ 0.4
CNOT3-201ENST00000221232 STK3Q13188 491 aa17.55■□□□□ 0.4
CNOT3-201ENST00000221232 CREB3L3Q68CJ9 461 aa17.55■□□□□ 0.4
CNOT3-201ENST00000221232 UBE3BQ7Z3V4 1068 aa17.55■□□□□ 0.4
CNOT3-201ENST00000221232 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.55■□□□□ 0.4
CNOT3-201ENST00000221232 GCKRQ14397 625 aa17.55■□□□□ 0.4
CNOT3-201ENST00000221232 ME3Q16798 604 aa17.55■□□□□ 0.4
CNOT3-201ENST00000221232 ANKRD13DQ6ZTN6 518 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms