RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CEP112Q8N8E3 955 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 LARP6Q9BRS8 491 aaKnown RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 CTNNA3Q9UI47 895 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 CDKL5O76039 1030 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 MYCBPQ99417 103 aaPredicted RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 CCDC69A6NI79 296 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 YEATS4O95619 227 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 GJB2P29033 226 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 UBE4AQ14139 1066 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 KRI1Q8N9T8 703 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 KCNH5Q8NCM2 988 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 CCDC114Q96M63 670 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 PRDM11Q9NQV5 511 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 NKTRP30414 1462 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 USO1O60763 962 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 TUBB4AP04350 444 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 MATR3P43243 847 aaKnown RBP eCLIP12.05□□□□□ -0.484e-6■■■□□ 16.6
VCL-201ENST00000211998 BMP2KLQ5H9B9 411 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 PPM1EQ8WY54 764 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 NAA15Q9BXJ9 866 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 RBSNQ9H1K0 784 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 DDX54Q8TDD1 881 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 SNX21Q969T3 373 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 CEP63Q96MT8 703 aa12.05□□□□□ -0.48
VCL-201ENST00000211998 SEPT11Q9NVA2 429 aaKnown RBP12.05□□□□□ -0.48
VCL-201ENST00000211998 MAP2K2P36507 400 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 CERS3Q8IU89 383 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 RBM28Q9NW13 759 aaKnown RBP12.04□□□□□ -0.48
VCL-201ENST00000211998 BTBD11A6QL63 1104 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 TMEM132AQ24JP5 1023 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 SPATA24Q86W54 205 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 ERO1AQ96HE7 468 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 CNPY2Q9Y2B0 182 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 KIAA0586Q9BVV6 1533 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 OPA1O60313 960 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 CLNS1AP54105 237 aaKnown RBP12.04□□□□□ -0.48
VCL-201ENST00000211998 SOGA3Q5TF21 947 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 SYT10Q6XYQ8 523 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 PAIP2Q9BPZ3 127 aaKnown RBP12.04□□□□□ -0.48
VCL-201ENST00000211998 JADE2Q9NQC1 790 aa12.04□□□□□ -0.48
VCL-201ENST00000211998 NESP48681 1621 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 NFE2L2Q16236 605 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 NUTM1Q86Y26 1132 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 CEP126Q9P2H0 1117 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 CCDC6Q16204 474 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 NUP133Q8WUM0 1156 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 EXOC6BQ9Y2D4 811 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 TMX3Q96JJ7 454 aa12.03□□□□□ -0.48
VCL-201ENST00000211998 AACSQ86V21 672 aa12.02□□□□□ -0.48
VCL-201ENST00000211998 SMC5Q8IY18 1101 aa12.02□□□□□ -0.48
VCL-201ENST00000211998 FBF1Q8TES7 1133 aa12.02□□□□□ -0.48
VCL-201ENST00000211998 PIBF1Q8WXW3 757 aa12.02□□□□□ -0.48
VCL-201ENST00000211998 EPRSP07814 1512 aaKnown RBP12.02□□□□□ -0.48
VCL-201ENST00000211998 ZSCAN22P10073 491 aaPredicted RBP12.02□□□□□ -0.49
VCL-201ENST00000211998 GUCY1B3Q02153 619 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 DUSP27Q5VZP5 1158 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 SRGAP3O43295 1099 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 MYL6BP14649 208 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 KIF5BP33176 963 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 C17orf53Q8N3J3 647 aaPredicted RBP12.02□□□□□ -0.49
VCL-201ENST00000211998 CEP83Q9Y592 693 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 CCDC61Q9Y6R9 512 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 NSD3Q9BZ95 1437 aa12.02□□□□□ -0.49
VCL-201ENST00000211998 DHX29Q7Z478 1369 aaKnown RBP12.01□□□□□ -0.49
VCL-201ENST00000211998 GNAT3A8MTJ3 354 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 ZEB2O60315 1214 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 ISM2Q6H9L7 571 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 TSC1Q92574 1164 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 ALS2CR12Q96Q35 445 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 SSBP05455 408 aaKnown RBP eCLIP12.01□□□□□ -0.49
VCL-201ENST00000211998 CKAP4Q07065 602 aaKnown RBP12.01□□□□□ -0.49
VCL-201ENST00000211998 UTP14CQ5TAP6 766 aaKnown RBP12.01□□□□□ -0.49
VCL-201ENST00000211998 HDXQ7Z353 690 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 DNAJC25Q9H1X3 360 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 ZHX3Q9H4I2 956 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 WASF1Q92558 559 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 BCL2L12Q9HB09 334 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 CC2D2AQ9P2K1 1620 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 UBASH3AP57075 661 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 CNNM3Q8NE01 707 aa12.01□□□□□ -0.49
VCL-201ENST00000211998 NUDT16Q96DE0 195 aaKnown RBP12.01□□□□□ -0.49
VCL-201ENST00000211998 RAB11FIP3O75154 756 aa12□□□□□ -0.49
VCL-201ENST00000211998 FKBP15Q5T1M5 1219 aa12□□□□□ -0.49
VCL-201ENST00000211998 SSH1Q8WYL5 1049 aa12□□□□□ -0.49
VCL-201ENST00000211998 NEBLO76041 1014 aa12□□□□□ -0.49
VCL-201ENST00000211998 DNAJC21Q5F1R6 531 aaKnown RBP12□□□□□ -0.49
VCL-201ENST00000211998 WDR66Q8TBY9 1149 aa12□□□□□ -0.49
VCL-201ENST00000211998 RAPGEF3O95398 923 aa12□□□□□ -0.49
VCL-201ENST00000211998 STARD3NLO95772 234 aa12□□□□□ -0.49
VCL-201ENST00000211998 SYT1P21579 422 aa12□□□□□ -0.49
VCL-201ENST00000211998 IGHMBP2P38935 993 aaKnown RBP12□□□□□ -0.49
VCL-201ENST00000211998 ABCC11Q96J66 1382 aa12□□□□□ -0.49
VCL-201ENST00000211998 CCDC160A6NGH7 325 aa12□□□□□ -0.49
VCL-201ENST00000211998 ATP2B2Q01814 1243 aa12□□□□□ -0.49
VCL-201ENST00000211998 FAM76AQ8TAV0 307 aa12□□□□□ -0.49
VCL-201ENST00000211998 CEP131Q9UPN4 1083 aa12□□□□□ -0.49
VCL-201ENST00000211998 ELF2Q15723 593 aa12□□□□□ -0.49
VCL-201ENST00000211998 UBAC1Q9BSL1 405 aa12□□□□□ -0.49
VCL-201ENST00000211998 TMCO5BA8MYB1 307 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms