RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ARMCX2Q7L311 632 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 MCM10Q7L590 875 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 ERASQ7Z444 233 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 ZNF573Q86YE8 665 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 ZNF397Q8NF99 534 aaPredicted RBP6.26□□□□□ -1.41
NUP54-215ENST00000514313 OR6F1Q8NGZ6 308 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 FAM76AQ8TAV0 307 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 VPS39Q96JC1 886 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 TMOD2Q9NZR1 351 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 MRPS18CQ9Y3D5 142 aaKnown RBP6.26□□□□□ -1.41
NUP54-215ENST00000514313 TNFRSF18Q9Y5U5 241 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 A0A087X002 238 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 IGHV3-20A0A0C4DH32 117 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 K7EQD1 137 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 PDXKO00764 312 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 MTRF1O75570 445 aaKnown RBP6.25□□□□□ -1.41
NUP54-215ENST00000514313 HPRP00739 348 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 CA3P07451 260 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 PAICSP22234 425 aaKnown RBP6.25□□□□□ -1.41
NUP54-215ENST00000514313 ZFP36L2P47974 494 aaKnown RBP6.25□□□□□ -1.41
NUP54-215ENST00000514313 SLC17A1Q14916 467 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 ZKSCAN8Q15776 578 aaPredicted RBP6.25□□□□□ -1.41
NUP54-215ENST00000514313 ZSWIM7Q19AV6 140 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 NOTCH2NLQ7Z3S9 236 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 LINC00518Q8N0U6 118 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 GVQW1Q8N7I0 195 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 GMCL1P1Q8NEA9 526 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 NDUFAF3Q9BU61 184 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 ZNF416Q9BWM5 594 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 CENPMQ9NSP4 180 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 BAIAP2L1Q9UHR4 511 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 ZNF490Q9ULM2 529 aaPredicted RBP6.25□□□□□ -1.41
NUP54-215ENST00000514313 FOXJ3Q9UPW0 622 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 KIF3AQ9Y496 699 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 RNF215Q9Y6U7 377 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 PTPRUQ92729 1446 aa6.25□□□□□ -1.41
NUP54-215ENST00000514313 ANKRD30BLA7E2S9 258 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 INPP4BO15327 924 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 GP9P14770 177 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 MAT2AP31153 395 aaKnown RBP6.24□□□□□ -1.41
NUP54-215ENST00000514313 TRIM23P36406 574 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 NDST1P52848 882 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 PEX3P56589 373 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 CDKL1Q00532 357 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 DDI2Q5TDH0 399 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 SULT1C3Q6IMI6 304 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 KIF6Q6ZMV9 814 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 FRRS1Q6ZNA5 592 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 CUZD1Q86UP6 607 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 BANPQ8N9N5 519 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 CHDHQ8NE62 594 aaPredicted RBP6.24□□□□□ -1.41
NUP54-215ENST00000514313 ZNF519Q8TB69 540 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 PNPLA2Q96AD5 504 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 KRT12Q99456 494 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 FICDQ9BVA6 458 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 TEX13BQ9BXU2 312 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 MED20Q9H944 212 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 IL1RAPQ9NPH3 570 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 AATFQ9NY61 560 aaKnown RBP eCLIP6.24□□□□□ -1.41
NUP54-215ENST00000514313 P2RX2Q9UBL9 471 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 CACNG5Q9UF02 275 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 TBK1Q9UHD2 729 aa6.24□□□□□ -1.41
NUP54-215ENST00000514313 A0A1B0GWJ7 208 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 EME2A4GXA9 379 aaPredicted RBP6.23□□□□□ -1.41
NUP54-215ENST00000514313 TMCO5BA8MYB1 307 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 TSPAN2O60636 221 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 NXPH4O95158 308 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 CALCBP10092 127 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 KRT13P13646 458 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 PRKACGP22612 351 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 PTPN6P29350 595 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 PDHA2P29803 388 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 ADSSP30520 456 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 ADRA1AP35348 466 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 CYCSP99999 105 aaKnown RBP6.23□□□□□ -1.41
NUP54-215ENST00000514313 NAAAQ02083 359 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 MLF2Q15773 248 aaPredicted RBP6.23□□□□□ -1.41
NUP54-215ENST00000514313 LRIT3Q3SXY7 679 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 DPY19L2P2Q6ZN68 376 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 KLHDC8BQ8IXV7 354 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 C11orf45Q8TAV5 145 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 CCDC51Q96ER9 411 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 USP28Q96RU2 1077 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 NMUR1Q9HB89 426 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 B3GAT2Q9NPZ5 323 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 GTSE1Q9NYZ3 720 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 LAMP5Q9UJQ1 280 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 MFHAS1Q9Y4C4 1052 aa6.23□□□□□ -1.41
NUP54-215ENST00000514313 KLF2Q9Y5W3 355 aaPredicted RBP6.23□□□□□ -1.41
NUP54-215ENST00000514313 A0A1B0GUL7 405 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 ZNF724A8MTY0 619 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 ANGPT2O15123 496 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 BUB1O43683 1085 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 AOC1P19801 751 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 FCGR2BP31994 310 aaPredicted RBP6.22□□□□□ -1.41
NUP54-215ENST00000514313 FCGR2CP31995 323 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 MATKP42679 507 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 NDST2P52849 883 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 ITPK1Q13572 414 aa6.22□□□□□ -1.41
NUP54-215ENST00000514313 HKDC1Q2TB90 917 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms