RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR1I1O60431 355 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SLITRK3O94933 977 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ZNF12P17014 697 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MYL9P24844 172 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TACR1P25103 407 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TNFSF8P32971 234 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TSPAN7P41732 249 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RBM34P42696 430 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 CLK1P49759 484 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 GALCP54803 685 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TBPL1P62380 186 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RPS24P62847 133 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 SSPNQ14714 243 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CPSF6Q16630 551 aaKnown RBP eCLIP3.9□□□□□ -1.79
USH2A-202ENST00000366942 CEP78Q5JTW2 689 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 GLT8D1Q68CQ7 371 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PM20D1Q6GTS8 502 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ACSM5Q6NUN0 579 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CCDC137Q6PK04 289 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 C3orf67Q6ZVT6 689 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 AAED1Q7RTV5 226 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MRPL10Q7Z7H8 261 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 ZNF709Q8N972 641 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 FAM181AQ8N9Y4 354 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SETD9Q8NE22 299 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TSPEARQ8WU66 669 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SLC6A18Q96N87 628 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PTPN18Q99952 460 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ORAI3Q9BRQ5 295 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TMED9Q9BVK6 235 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 HEXA-AS1Q9H8Q6 139 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 IPPKQ9H8X2 491 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHA2Q9HB19 425 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MID1IP1Q9NPA3 183 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ACTR10Q9NZ32 417 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CLTCL1P53675 1640 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TRGV5A0A0B4J1U4 118 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 FAM92AA1XBS5 289 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 A6NIZ1 184 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ZNF814B7Z6K7 855 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ERVH48-1M5A8F1 160 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SLC1A7O00341 560 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ZNF749O43361 778 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ITM2AO43736 263 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SPAG7O75391 227 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ITGA5P08648 1049 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PGM1P36871 562 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SGSHP51688 502 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 HK3P52790 923 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RAP1BP61224 184 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RAP1AP62834 184 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RPP30P78346 268 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 TMEM267Q0VDI3 215 aaPredicted RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 TMEM115Q12893 351 aaPredicted RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 HSPB3Q12988 150 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CHIT1Q13231 466 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MPP2Q14168 576 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 GALEQ14376 348 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PCBP2Q15366 365 aaKnown RBP eCLIP3.9□□□□□ -1.79
USH2A-202ENST00000366942 ETFDHQ16134 617 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PDK4Q16654 411 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TIMM50Q3ZCQ8 353 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CCDC153Q494R4 210 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PLK5Q496M5 336 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RBM48Q5RL73 367 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHS1Q5SXH7 462 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CD276Q5ZPR3 534 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 SEZ6L2Q6UXD5 910 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 IL20RBQ6UXL0 311 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MAMDC2Q7Z304 686 aaPredicted RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 PLCZ1Q86YW0 608 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 GALNT6Q8NCL4 622 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 BBS1Q8NFJ9 593 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RCC1LQ96I51 464 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 NKX3-1Q99801 234 aaPredicted RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 SORBS1Q9BX66 1292 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 PITHD1Q9GZP4 211 aaPredicted RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 TMEM231Q9H6L2 316 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MYBPHLA2RUH7 354 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 AGAP5A6NIR3 686 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 LMO7DNF2Z398 122 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 H0Y8X5 98 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 H3BML4 177 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 BTN3A3O00478 584 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 MSI1O43347 362 aaKnown RBP3.9□□□□□ -1.79
USH2A-202ENST00000366942 GMFGO60234 142 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 LDB3O75112 727 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 GABBR2O75899 941 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 RCBTB2O95199 551 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 LDLRP01130 860 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 HMGN1P05114 100 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 GP1BAP07359 652 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 FAM228BP0C875 321 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ADH6P28332 368 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 TPMTP51580 245 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 CA9Q16790 459 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 PARM1Q6UWI2 310 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ETFBKMTQ8IXQ9 262 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 ZNF384Q8TF68 577 aa3.9□□□□□ -1.79
USH2A-202ENST00000366942 LPGAT1Q92604 370 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms