RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 APMAPQ9HDC9 416 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 BCAP29Q9UHQ4 241 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 RAPGEFL1Q9UHV5 662 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 MAGEL2Q9UJ55 1249 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 RARRES3Q9UL19 164 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 ZNF292O60281 2723 aa17.48■□□□□ 0.39
CLN3-206ENST00000360019 CDC123O75794 336 aaPredicted RBP17.47■□□□□ 0.39
CLN3-206ENST00000360019 KRT75O95678 551 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 ATXN8OSP0DMR3 200 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 ETFAP13804 333 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 CRATP43155 626 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 XCR1P46094 333 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 SPDYE7PQ495Y7 208 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 C1orf189Q5VU69 101 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 GLYATQ6IB77 296 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 RHBDD2Q6NTF9 364 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 TMEM64Q6YI46 380 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 ADCY4Q8NFM4 1077 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 COL26A1Q96A83 441 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 TBC1D20Q96BZ9 403 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 RNPEPL1Q9HAU8 725 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 SEMA3GQ9NS98 782 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 NKX1-2Q9UD57 310 aaPredicted RBP17.47■□□□□ 0.39
CLN3-206ENST00000360019 TCRBV3S1A0A5B6 114 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 EFCAB7A8K855 629 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 TGFBR3LH3BV60 316 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 JRKO75564 520 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 FHP07954 510 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 PORP16435 677 aaPredicted RBP17.47■□□□□ 0.39
CLN3-206ENST00000360019 SOX18P35713 384 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 MC3RP41968 323 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 DSG2Q14126 1118 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 RCN1Q15293 331 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 CCDC157Q569K6 752 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 PWWP2BQ6NUJ5 590 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 C6orf120Q7Z4R8 191 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 PROSER1Q86XN7 944 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 ZNF595Q8IYB9 648 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 BMPERQ8N8U9 685 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 SLC38A9Q8NBW4 561 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 AGBL5Q8NDL9 886 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 TNIP2Q8NFZ5 429 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 ELP4Q96EB1 424 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 MAGED4Q96JG8 741 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 LRGUKQ96M69 825 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 DCLRE1BQ9H816 532 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 S100A14Q9HCY8 104 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 CDC14AQ9UNH5 594 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 SRPK3Q9UPE1 567 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 MRPS33Q9Y291 106 aaKnown RBP17.47■□□□□ 0.39
CLN3-206ENST00000360019 CLDN16Q9Y5I7 305 aa17.47■□□□□ 0.39
CLN3-206ENST00000360019 OR2W5A6NFC9 320 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 TNFRSF21O75509 655 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 STAMBPO95630 424 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 ATP1B1P05026 303 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 C8BP07358 591 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 RPS26P62854 115 aaKnown RBP17.46■□□□□ 0.39
CLN3-206ENST00000360019 MRPS35P82673 323 aaKnown RBP17.46■□□□□ 0.39
CLN3-206ENST00000360019 RHDQ02161 417 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 FADDQ13158 208 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 TP53BP2Q13625 1128 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 RBM44Q6ZP01 1051 aaKnown RBP17.46■□□□□ 0.39
CLN3-206ENST00000360019 SFXN5Q8TD22 340 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 FIG4Q92562 907 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 KAT2AQ92830 837 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 MAL2Q969L2 176 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 CDC6Q99741 560 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 TRIM15Q9C019 465 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 SERHL2Q9H4I8 314 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 ANKRA2Q9H9E1 313 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 ZNF304Q9HCX3 659 aa17.46■□□□□ 0.39
CLN3-206ENST00000360019 ZCCHC3Q9NUD5 404 aaKnown RBP17.46■□□□□ 0.39
CLN3-206ENST00000360019 ZFHX2Q9C0A1 2572 aaPredicted RBP17.45■□□□□ 0.38
CLN3-206ENST00000360019 TCRBV5S2A0A599 114 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 BLACEA4D250 179 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 AQP12BA6NM10 295 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 H3BNX3 289 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 CTNSO60931 367 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 FKBP6O75344 327 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 RFPL3O75679 317 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 SCRG1O75711 98 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 CCKBRP32239 447 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 BTG2P78543 158 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 SLC13A2Q13183 592 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 VMACQ2NL98 169 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 ZNF628Q5EBL2 1059 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 AAGABQ6PD74 315 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 SZRD1Q7Z422 152 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 PPP1R3BQ86XI6 285 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 TMEM126BQ8IUX1 230 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 AQP12AQ8IXF9 295 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 ENDOVQ8N8Q3 282 aaKnown RBP17.45■□□□□ 0.38
CLN3-206ENST00000360019 OR7G2Q8NG99 324 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 RSRC1Q96IZ7 334 aaKnown RBP17.45■□□□□ 0.38
CLN3-206ENST00000360019 SPATA9Q9BWV2 254 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 RAD21L1Q9H4I0 556 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 GORASP2Q9H8Y8 452 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 PRTFDC1Q9NRG1 225 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 LANCL2Q9NS86 450 aa17.45■□□□□ 0.38
CLN3-206ENST00000360019 CXCR6O00574 342 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms