RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OR5H15A6NDH6 313 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 SH2D1BO14796 132 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 CLDN3O15551 220 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 ZNF432O94892 652 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 SELEP16581 610 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 CYP2F1P24903 491 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 MTIF2P46199 727 aaKnown RBP6.29□□□□□ -1.4
NUP54-215ENST00000514313 ELP6Q0PNE2 266 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 SGSM1Q2NKQ1 1148 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 KRTAP5-3Q6L8H2 238 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 SLC25A24Q6NUK1 477 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 ZER1Q7Z7L7 766 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 DDHD1Q8NEL9 900 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 TMEM37Q8WXS4 190 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 TRIM44Q96DX7 344 aaPredicted RBP6.29□□□□□ -1.4
NUP54-215ENST00000514313 DTNBP1Q96EV8 351 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 ACCSQ96QU6 501 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 DCTN5Q9BTE1 182 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 NLNQ9BYT8 704 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 WDR13Q9H1Z4 485 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 SLC25A19Q9HC21 320 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 TMEM181Q9P2C4 612 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 ERRFI1Q9UJM3 462 aaPredicted RBP6.29□□□□□ -1.4
NUP54-215ENST00000514313 KLHDC2Q9Y2U9 406 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 ZHX2Q9Y6X8 837 aa6.29□□□□□ -1.4
NUP54-215ENST00000514313 RAD54L2Q9Y4B4 1467 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 VPS26AO75436 327 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 KRT6BP04259 564 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 TSPY4P0CV99 314 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 TSPY10P0CW01 314 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 KRT6CP48668 564 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 ABCE1P61221 599 aaKnown RBP6.28□□□□□ -1.4
NUP54-215ENST00000514313 RPS4XP62701 263 aaKnown RBP6.28□□□□□ -1.4
NUP54-215ENST00000514313 DHODHQ02127 395 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 HSF2Q03933 536 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 RBBP4Q09028 425 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 RIGQ13278 110 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 GCKRQ14397 625 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 RFTN1Q14699 578 aaPredicted RBP6.28□□□□□ -1.4
NUP54-215ENST00000514313 FAM189A2Q15884 450 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 MISPQ8IVT2 679 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 RDH11Q8TC12 318 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 MRGPRDQ8TDS7 321 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 MCHR2Q969V1 340 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 CNRIP1Q96F85 164 aaPredicted RBP6.28□□□□□ -1.4
NUP54-215ENST00000514313 LRR1Q96L50 414 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 OVOL2Q9BRP0 275 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 DGCR6LQ9BY27 220 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 PLCXD1Q9NUJ7 323 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 NLGN3Q9NZ94 848 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 BCAP29Q9UHQ4 241 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 PROCRQ9UNN8 238 aa6.28□□□□□ -1.4
NUP54-215ENST00000514313 A0A0U1RQV5 110 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 MEIOCA2RUB1 952 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 G3V2L1 256 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 LGALS8O00214 317 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 TOM1L1O75674 476 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 APBB3O95704 486 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 HSPA5P11021 654 aaKnown RBP6.27□□□□□ -1.41
NUP54-215ENST00000514313 ANOS1P23352 680 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 RAPSNQ13702 412 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 C1orf189Q5VU69 101 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 STEAP1BQ6NZ63 245 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 ASRGL1Q7L266 308 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 MLKLQ8NB16 471 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 CHPT1Q8WUD6 406 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 TCP11Q8WWU5 503 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 NCLNQ969V3 563 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 RAB7BQ96AH8 199 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 CARD6Q9BX69 1037 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 FAM124BQ9H5Z6 455 aaPredicted RBP6.27□□□□□ -1.41
NUP54-215ENST00000514313 KCNK13Q9HB14 408 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 PLEKHA3Q9HB20 300 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 SPHK2Q9NRA0 654 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 TEX10Q9NXF1 929 aaPredicted RBP6.27□□□□□ -1.41
NUP54-215ENST00000514313 ATXN10Q9UBB4 475 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 MRPS28Q9Y2Q9 187 aaKnown RBP6.27□□□□□ -1.41
NUP54-215ENST00000514313 SLC6A5Q9Y345 797 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 ZNF175Q9Y473 711 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 WIPI2Q9Y4P8 454 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.27□□□□□ -1.41
NUP54-215ENST00000514313 FGD5Q6ZNL6 1462 aa6.27□□□□□ -1.41
NUP54-215ENST00000514313 LOC390937A0A1W2PQ73 354 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 IFITM10A6NMD0 228 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 MEI4A8MW99 385 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 TNFSF12O43508 249 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 NXPH2O95156 264 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 IGHDP01880 384 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 AMBPP02760 352 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 FCER2P06734 321 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 FHP07954 510 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 RRASP10301 218 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 MBL2P11226 248 aaPredicted RBP6.26□□□□□ -1.41
NUP54-215ENST00000514313 ID1P41134 155 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 OVGP1Q12889 678 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 HLA-BQ31612 363 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 ADPRMQ3LIE5 342 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 ANKDD1AQ495B1 522 aa6.26□□□□□ -1.41
NUP54-215ENST00000514313 CWC27Q6UX04 472 aaKnown RBP6.26□□□□□ -1.41
NUP54-215ENST00000514313 C18orf65Q6ZTR6 163 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms