RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 C16orf45Q96MC5 204 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 GPR78Q96P69 363 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 TSPAN10Q9H1Z9 355 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 ACTR8Q9H981 624 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 RYDENQ9NUL5 291 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 NINJ2Q9NZG7 142 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 PHF11Q9UIL8 331 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 ERVK-11Q9UQG0 969 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 IKBKGQ9Y6K9 419 aa17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 NCOA6Q14686 2063 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-203ENST00000617445 PKDREJQ9NTG1 2253 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 A8MVJ9 347 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 RTCAO00442 366 aaKnown RBP17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 DYRK3O43781 588 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 PEX1O43933 1283 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 WISP2O76076 250 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 INHBAP08476 426 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 RBP1P09455 135 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 ABOP16442 354 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 MEOX1P50221 254 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 SLAMF1Q13291 335 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 GTF2H2Q13888 395 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 GTF2H2CQ6P1K8 395 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 MYLK4Q86YV6 388 aaPredicted RBP17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 ZFP62Q8NB50 900 aaPredicted RBP17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 SLC44A1Q8WWI5 657 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 ASB15Q8WXK1 588 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 OR51B5Q9H339 312 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 CHST11Q9NPF2 352 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 DMRT3Q9NQL9 472 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 HPF1Q9NWY4 346 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 COPS7AQ9UBW8 275 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 SH3BGRL2Q9UJC5 107 aa17.73■□□□□ 0.43
CCDC28A-203ENST00000617445 TMEM200CA6NKL6 621 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 C17orf105B2RV13 164 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 PRRG2O14669 202 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 TFECO14948 347 aaPredicted RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 LDB3O75112 727 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 OR2J2O76002 312 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 COL6A2P12110 1019 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 CNTFP26441 200 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 IGLV3-21P80748 117 aaPredicted RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 CUL3Q13618 768 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 DDX39BQ13838 428 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 RNFT1Q5M7Z0 435 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 C10orf62Q5T681 223 aaPredicted RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 GPR180Q86V85 440 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 TICAM1Q8IUC6 712 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 L3MBTL4Q8NA19 623 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 ISL2Q96A47 359 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 ANKRD9Q96BM1 317 aaPredicted RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 RBM18Q96H35 190 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 ART5Q96L15 291 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 FMO2Q99518 471 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 OR8D2Q9GZM6 311 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 VPS11Q9H270 941 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 RPF2Q9H7B2 306 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 IPPKQ9H8X2 491 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 TINAGQ9UJW2 476 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 PPT2Q9UMR5 302 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 MEMO1Q9Y316 297 aa17.72■□□□□ 0.43
CCDC28A-203ENST00000617445 DNAJC13O75165 2243 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 FOXE1O00358 373 aaPredicted RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 PRKNO60260 465 aaPredicted RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 KRT38O76015 456 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 BUD31P41223 144 aaPredicted RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 STT3AP46977 705 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 RNF4P78317 190 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 TSNAXIP1Q2TAA8 658 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 RGS9BPQ6ZS82 235 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 MDGA2Q7Z553 956 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 PSD4Q8NDX1 1056 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 SLC2A12Q8TD20 617 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 PHF10Q8WUB8 498 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 MARVELD3Q96A59 401 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 SGCZQ96LD1 299 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 DGAT2Q96PD7 388 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 RASL10BQ96S79 203 aa17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 MTERF1Q99551 399 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 PELOQ9BRX2 385 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 CDC42EP4Q9H3Q1 356 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 LYARQ9NX58 379 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 CPSF2Q9P2I0 782 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 DMGDHQ9UI17 866 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-203ENST00000617445 ABCA12Q86UK0 2595 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 CACNA1CQ13936 2221 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF407Q9C0G0 2248 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 E9PLN8 166 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 SAP18O00422 153 aaKnown RBP17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 PLPP1O14494 284 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 SH3BGRLO75368 114 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 CLDN9O95484 217 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 CTAGE8P0CG41 777 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 MAGEA12P43365 314 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 HK2P52789 917 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 CPSF6Q16630 551 aaKnown RBP eCLIP17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 ZNF630Q2M218 657 aaPredicted RBP17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 MPEG1Q2M385 716 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 TECRLQ5HYJ1 363 aa17.7■□□□□ 0.42
CCDC28A-203ENST00000617445 OPN5Q6U736 354 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms