RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 MAGEA12P43365 314 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 MEOX1P50221 254 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 SMSP52788 366 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 SLAMF1Q13291 335 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 CUL3Q13618 768 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 GLE1Q53GS7 698 aaKnown RBP16.49■□□□□ 0.23
HDDC3-201ENST00000330334 L3MBTL4Q8NA19 623 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 MNS1Q8NEH6 495 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 OR5L2Q8NGL0 311 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 C16orf45Q96MC5 204 aaPredicted RBP16.49■□□□□ 0.23
HDDC3-201ENST00000330334 RUBCNLQ9H714 662 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 ACTR8Q9H981 624 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 CHST11Q9NPF2 352 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 DMRT3Q9NQL9 472 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 PHF11Q9UIL8 331 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 TINAGQ9UJW2 476 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 TMCO1Q9UM00 188 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 PPT2Q9UMR5 302 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 MEMO1Q9Y316 297 aa16.49■□□□□ 0.23
HDDC3-201ENST00000330334 A8MVJ9 347 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 C17orf105B2RV13 164 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 FOXE1O00358 373 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 LDB3O75112 727 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 TUBB4AP04350 444 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 RBP1P09455 135 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 TNNI3P19429 210 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 TLX1P31314 330 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 SERPINB9P50453 376 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 PHEXP78562 749 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 GTF2H2Q13888 395 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 UAP1Q16222 522 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 ZNF630Q2M218 657 aaPredicted RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 GTF2H2CQ6P1K8 395 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 MDGA2Q7Z553 956 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 GPR180Q86V85 440 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 EID3Q8N140 333 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 SLC2A12Q8TD20 617 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 ASB15Q8WXK1 588 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 MRRFQ96E11 262 aaKnown RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 RPF2Q9H7B2 306 aaKnown RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 IPPKQ9H8X2 491 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 HPF1Q9NWY4 346 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 DMGDHQ9UI17 866 aaKnown RBP16.48■□□□□ 0.23
HDDC3-201ENST00000330334 PCNX1Q96RV3 2341 aa16.48■□□□□ 0.23
HDDC3-201ENST00000330334 SAP18O00422 153 aaKnown RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 PLPP1O14494 284 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 INHBAP08476 426 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 COL6A2P12110 1019 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 COX7A2P14406 83 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 ABOP16442 354 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 CNTFP26441 200 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 STT3AP46977 705 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 RAP1GDS1P52306 607 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 RNF4P78317 190 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 ADORA2A-AS1P86434 159 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 MPEG1Q2M385 716 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 TECRLQ5HYJ1 363 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 C10orf62Q5T681 223 aaPredicted RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 RGS9BPQ6ZS82 235 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 GOLGA7Q7Z5G4 137 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 DOLPP1Q86YN1 238 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 PSD4Q8NDX1 1056 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 PHF10Q8WUB8 498 aaKnown RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 MARVELD3Q96A59 401 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 RBM18Q96H35 190 aaKnown RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 SGCZQ96LD1 299 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 RASL10BQ96S79 203 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 FMO2Q99518 471 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 MTERF1Q99551 399 aaKnown RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 ZNF717Q9BY31 904 aaPredicted RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 OR8D2Q9GZM6 311 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 DDX31Q9H8H2 851 aaKnown RBP16.47■□□□□ 0.23
HDDC3-201ENST00000330334 PRM3Q9NNZ6 103 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 PLSCR2Q9NRY7 297 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 SH3BGRL2Q9UJC5 107 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 ZNF180Q9UJW8 692 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 ERVK-11Q9UQG0 969 aa16.47■□□□□ 0.23
HDDC3-201ENST00000330334 E9PLN8 166 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 STX16-NPEPL1H3BU86 382 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 STX16O14662 325 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 PRRG2O14669 202 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 TFECO14948 347 aaPredicted RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 PROM1O43490 865 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 FGF17O60258 216 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 CLDN9O95484 217 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 ETHE1O95571 254 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 IGKV3-11P04433 115 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 HK2P52789 917 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 RPS13P62277 151 aaKnown RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 TNFRSF17Q02223 184 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 DDX39BQ13838 428 aaKnown RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 MRM1Q6IN84 353 aaKnown RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 C16orf47Q6ZP98 133 aaPredicted RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 TAOK1Q7L7X3 1001 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 FGD2Q7Z6J4 655 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 MYLK4Q86YV6 388 aaPredicted RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 PLD6Q8N2A8 252 aaKnown RBP16.46■□□□□ 0.23
HDDC3-201ENST00000330334 GOLM1Q8NBJ4 401 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 NUBPLQ8TB37 319 aa16.46■□□□□ 0.23
HDDC3-201ENST00000330334 WDR20Q8TBZ3 569 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms