RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 TIMP1P01033 207 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 DANCRP0C864 163 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 HAPLN1P10915 354 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 IL9P15248 144 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 GJA1P17302 382 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 MPZP25189 248 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 DNA2P51530 1060 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 DEFB103AP81534 67 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 MYL7Q01449 175 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 STK4Q13043 487 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 COG2Q14746 738 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 NTRK2Q16620 822 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 MZT2BQ6NZ67 158 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CTR9Q6PD62 1173 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CCBE1Q6UXH8 406 aaPredicted RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 TMEM179Q6ZVK1 233 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 ARHGAP22Q7Z5H3 698 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 TLK2Q86UE8 772 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 LGI2Q8N0V4 545 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 C11orf42Q8N5U0 333 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 FAM133AQ8N9E0 248 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 TDRD5Q8NAT2 981 aaKnown RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 OR10S1Q8NGN2 331 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CFAP61Q8NHU2 1237 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 PRPF31Q8WWY3 499 aaKnown RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 SPDL1Q96EA4 605 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 RSRC1Q96IZ7 334 aaKnown RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 SLF1Q9BQI6 1058 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 VCPKMTQ9H867 229 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 JPT2Q9H910 190 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 MYNNQ9NPC7 610 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 GIMAP4Q9NUV9 329 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 GDE1Q9NZC3 331 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 MYO5AQ9Y4I1 1855 aaKnown RBP2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CUL9Q8IWT3 2517 aa2.66□□□□□ -1.98
SCFD1-219ENST00000556413 CDK5RAP2Q96SN8 1893 aa2.65□□□□□ -1.98
SCFD1-219ENST00000556413 TRBV5-5A0A0J9YX44 114 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 TRIM49BA6NDI0 452 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 O00370 1275 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 MEIS2O14770 477 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ADAM20O43506 726 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ERAL1O75616 437 aaKnown RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 IGHV2-70P01814 119 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 KRT6AP02538 564 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 KRT6BP04259 564 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ZNF286BP0CG31 522 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 GOLGA8HP0CJ92 632 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 SAT1P21673 171 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 CALML3P27482 149 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 KRT6CP48668 564 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 TDO2P48775 406 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 KHKP50053 298 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ITGA7Q13683 1181 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 BAATQ14032 418 aaPredicted RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ZNF146Q15072 292 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 MAPRE1Q15691 268 aaKnown RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 USH1GQ495M9 461 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 C12orf60Q5U649 245 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 SPATA1Q5VX52 437 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 TMEM64Q6YI46 380 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 CHST3Q7LGC8 479 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 ZC3H3Q8IXZ2 948 aaKnown RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 OR10G7Q8NGN6 311 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 NSMAFQ92636 917 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 PTERQ96BW5 349 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 NXNL1Q96CM4 212 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 THOC1Q96FV9 657 aaKnown RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 SERAC1Q96JX3 654 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 B3GALT6Q96L58 329 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 GLT1D1Q96MS3 346 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 GCNAQ96QF7 691 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 TEX13BQ9BXU2 312 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 OPA3Q9H6K4 179 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 PRMT7Q9NVM4 692 aaPredicted RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 FBXO2Q9UK22 296 aaPredicted RBP2.65□□□□□ -1.99
SCFD1-219ENST00000556413 PLCL2Q9UPR0 1127 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 MTCH2Q9Y6C9 303 aa2.65□□□□□ -1.99
SCFD1-219ENST00000556413 RLFQ13129 1914 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 LOC100509620A0A075B734 347 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 IGHV3-38A0A0C4DH36 116 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 GLOD5A6NK44 160 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 F5H6K3 240 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 GPAA1O43292 621 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 TLX2O43763 284 aaPredicted RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 DUSP11O75319 330 aaKnown RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 SLC25A27O95847 323 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 THY1P04216 161 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 PCP11498 1178 aaKnown RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 FDPSP14324 419 aaKnown RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 AOC1P19801 751 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 ELAVL4P26378 380 aaKnown RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 ATP4BP51164 291 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 HAND2P61296 217 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 FKBP3Q00688 224 aaKnown RBP2.64□□□□□ -1.99
SCFD1-219ENST00000556413 SP4Q02446 784 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 KLRC3Q07444 240 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 KLC1Q07866 573 aa2.64□□□□□ -1.99
SCFD1-219ENST00000556413 TRA2AQ13595 282 aaKnown RBP eCLIP2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms