RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 BACE1P56817 501 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 TEAD2Q15562 447 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 OR1C1Q15619 314 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 TAB1Q15750 504 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 GPAT3Q53EU6 434 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 LDLRAP1Q5SW96 308 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 CAPN13Q6MZZ7 669 aaPredicted RBP6.41□□□□□ -1.38
NUP54-215ENST00000514313 Q6ZVQ6 151 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 WDR49Q8IV35 697 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 ARL6IP6Q8N6S5 226 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 RNF148Q8N7C7 305 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 DQX1Q8TE96 717 aaKnown RBP6.41□□□□□ -1.38
NUP54-215ENST00000514313 RPGRIP1Q96KN7 1286 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 UHRF2Q96PU4 802 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 EPYCQ99645 322 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 JPH2Q9BR39 696 aaPredicted RBP6.41□□□□□ -1.38
NUP54-215ENST00000514313 KRTAP17-1Q9BYP8 105 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 WWP1Q9H0M0 922 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 ATG10Q9H0Y0 220 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 RWDD1Q9H446 243 aaPredicted RBP6.41□□□□□ -1.38
NUP54-215ENST00000514313 HOMER3Q9NSC5 361 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 TECRQ9NZ01 308 aaKnown RBP6.41□□□□□ -1.38
NUP54-215ENST00000514313 WDR37Q9Y2I8 494 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 GRID2O43424 1007 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 KRT86O43790 486 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 TXNDC12O95881 172 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 C4BPBP20851 252 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 PKLRP30613 574 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 TKTL1P51854 596 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 HSPA14Q0VDF9 509 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 DPYSQ14117 519 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 KRT81Q14533 505 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 EXOSC7Q15024 291 aaKnown RBP6.4□□□□□ -1.38
NUP54-215ENST00000514313 HSP90AA5PQ58FG0 334 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 TMEM26Q6ZUK4 368 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 PTAR1Q7Z6K3 402 aaPredicted RBP6.4□□□□□ -1.38
NUP54-215ENST00000514313 CACUL1Q86Y37 369 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 FUCA2Q9BTY2 467 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 CCSER1Q9C0I3 900 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 SLC26A1Q9H2B4 701 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 TMEM231Q9H6L2 316 aa6.4□□□□□ -1.38
NUP54-215ENST00000514313 hCG_38984A0A1B0GV85 526 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 SH3PXD2BA1X283 911 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 NDC80O14777 642 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 CPLX1O14810 134 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 IKBKBO14920 756 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 IGLV2-11P01706 119 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 GNSP15586 552 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 GLRA1P23415 457 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 PAX9P55771 341 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 PRKCEQ02156 737 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 HNRNPDQ14103 355 aaKnown RBP6.39□□□□□ -1.39
NUP54-215ENST00000514313 MPPE1Q53F39 396 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 HOGA1Q86XE5 327 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 RAB42Q8N4Z0 105 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 LRRC17Q8N6Y2 441 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 ARHGAP45Q92619 1136 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 SYAP1Q96A49 352 aaPredicted RBP6.39□□□□□ -1.39
NUP54-215ENST00000514313 PCED1BQ96HM7 432 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 NODALQ96S42 347 aa6.39□□□□□ -1.39
NUP54-215ENST00000514313 DIMT1Q9UNQ2 313 aaKnown RBP6.39□□□□□ -1.39
NUP54-215ENST00000514313 A0A087WW49 117 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 SURF4O15260 269 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 PCDH7O60245 1069 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 DIRAS3O95661 229 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 PATE4P0C8F1 98 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 ACAA2P42765 397 aaKnown RBP6.38□□□□□ -1.39
NUP54-215ENST00000514313 LIMK2P53671 638 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 RTL6Q6ICC9 239 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 Q71RC1 249 aaPredicted RBP6.38□□□□□ -1.39
NUP54-215ENST00000514313 SLC22A15Q8IZD6 547 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 CNBD1Q8NA66 436 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 MINDY2Q8NBR6 621 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 OR4D10Q8NGI6 311 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 OR6S1Q8NH40 331 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 PAPOLGQ9BWT3 736 aaKnown RBP6.38□□□□□ -1.39
NUP54-215ENST00000514313 MED17Q9NVC6 651 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 ANKMY1Q9P2S6 941 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 ATG4BQ9Y4P1 393 aa6.38□□□□□ -1.39
NUP54-215ENST00000514313 RNF123Q5XPI4 1314 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 SHISA7A6NL88 538 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 F8WDY8 70 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 CHEK1O14757 476 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 FGF19O95750 216 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 ANGPTL1O95841 491 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 GIFP27352 417 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 ZNF131P52739 623 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 GABPB1Q06547 395 aaPredicted RBP6.37□□□□□ -1.39
NUP54-215ENST00000514313 TAF7Q15545 349 aaPredicted RBP6.37□□□□□ -1.39
NUP54-215ENST00000514313 CCDC6Q16204 474 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 LIPJQ5W064 366 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 KIAA1161Q6NSJ0 714 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 CDC42EP5Q6NZY7 148 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 OLFM4Q6UX06 510 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 Q6ZSR9 355 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 CDHR3Q6ZTQ4 885 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 SLC22A16Q86VW1 577 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 C17orf64Q86WR6 236 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 LMNTD2Q8IXW0 634 aa6.37□□□□□ -1.39
NUP54-215ENST00000514313 LSMEM2Q8N112 164 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms