RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 XGP55808 180 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 PHEXP78562 749 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 RAET1GQ6H3X3 334 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 IRGCQ6NXR0 463 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 ADGRD2Q7Z7M1 963 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 SYVN1Q86TM6 617 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 HSCBQ8IWL3 235 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 OR56B1Q8NGI3 324 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 OR4L1Q8NH43 312 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 SMAP2Q8WU79 429 aaPredicted RBP6.44□□□□□ -1.38
NUP54-215ENST00000514313 PITPNM3Q9BZ71 974 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 RAB17Q9H0T7 212 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 CLIP2Q9UDT6 1046 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 MRPS2Q9Y399 296 aaKnown RBP6.44□□□□□ -1.38
NUP54-215ENST00000514313 SELENOKQ9Y6D0 94 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 NEDD4P46934 1319 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 A0A1W2PR80 420 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 PMS2P5A8MQ11 134 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 KHDRBS3O75525 346 aaKnown RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 EML2O95834 649 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 SERPINF2P08697 491 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 PRSS56P0CW18 603 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 TPBGLP0DKB5 382 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 FUT1P19526 365 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 CCKARP32238 428 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 KIF5BP33176 963 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 TIMP3P35625 211 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 SLC26A5P58743 744 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 SSTP61278 116 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 GUCY2DQ02846 1103 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 KLHL30Q0D2K2 578 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 CARTPTQ16568 116 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 SPANXN4Q5MJ08 99 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 FFAR4Q5NUL3 377 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 GALNT17Q6IS24 598 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 FAM53AQ6NSI3 398 aaPredicted RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 APLFQ8IW19 511 aaPredicted RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 DND1Q8IYX4 353 aaKnown RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 TRIM58Q8NG06 486 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 CCDC110Q8TBZ0 833 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 AZIN2Q96A70 460 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 RAB39BQ96DA2 213 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 OMA1Q96E52 524 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 ZNF274Q96GC6 653 aaPredicted RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 FAM218AQ96MZ4 157 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 ERGIC2Q96RQ1 377 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 FUNDC2Q9BWH2 189 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 GANQ9H2C0 597 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 C3orf14Q9HBI5 128 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 S100A14Q9HCY8 104 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 MRTO4Q9UKD2 239 aaKnown RBP6.43□□□□□ -1.38
NUP54-215ENST00000514313 TMCC3Q9ULS5 477 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 PLCL2Q9UPR0 1127 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 AP1M2Q9Y6Q5 423 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 SCN5AQ14524 2016 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 UMODL1Q5DID0 1318 aa6.43□□□□□ -1.38
NUP54-215ENST00000514313 LMO7DNF2Z398 122 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 BLOC1S5-TXNDC5H3BN57 136 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 ADAM12O43184 909 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 NME2P1O60361 137 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 HEXBP07686 556 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 GPX3P22352 226 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 FCARP24071 287 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 DNAJB1P25685 340 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 CCND2P30279 289 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 CCR4P51679 360 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 NLRP11P59045 1033 aaKnown RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 RPL36AP83881 106 aaKnown RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 MFGE8Q08431 387 aaPredicted RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 SPP2Q13103 211 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 MEF2DQ14814 521 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 EFTUD2Q15029 972 aaKnown RBP eCLIP6.42□□□□□ -1.38
NUP54-215ENST00000514313 C3AR1Q16581 482 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 WSCD2Q2TBF2 565 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 CMPK2Q5EBM0 449 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 RFPL4BQ6ZWI9 263 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 BNIPLQ7Z465 357 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 ELMOD1Q8N336 334 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 DCLK2Q8N568 766 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 ADAD2Q8NCV1 583 aaKnown RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 OR6M1Q8NGM8 313 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 ZNF486Q96H40 463 aaPredicted RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 FTHL17Q9BXU8 183 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 EGLN1Q9GZT9 426 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 DPH5Q9H2P9 285 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 FNDC4Q9H6D8 234 aaPredicted RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 POLE3Q9NRF9 147 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 CNOT2Q9NZN8 540 aaKnown RBP6.42□□□□□ -1.38
NUP54-215ENST00000514313 IL20RAQ9UHF4 553 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 ANGPTL3Q9Y5C1 460 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 NPC1L1Q9UHC9 1359 aa6.42□□□□□ -1.38
NUP54-215ENST00000514313 WDR81Q562E7 1941 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 NKX6-3A6NJ46 265 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 ANHXE9PGG2 379 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 SIGLEC5O15389 551 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 SYNGR4O95473 234 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 PROS1P07225 676 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 HMBSP08397 361 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 ZCCHC18P0CG32 403 aa6.41□□□□□ -1.38
NUP54-215ENST00000514313 FEN1P39748 380 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms