RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 OR51Q1Q8NH59 317 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 ZCCHC14Q8WYQ9 949 aaKnown RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 FKBP10Q96AY3 582 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 TUBGCP3Q96CW5 907 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 APIPQ96GX9 242 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 LRTM1Q9HBL6 345 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 PRDM7Q9NQW5 492 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 SLC22A11Q9NSA0 550 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 ZNF282Q9UDV7 671 aaPredicted RBP14.16□□□□□ -0.14
NUP54-213ENST00000513352 HAO1Q9UJM8 370 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 FBXW2Q9UKT8 454 aa14.16□□□□□ -0.14
NUP54-213ENST00000513352 GNG14A0A1W2PPG7 69 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 SLCO1B7G3V0H7 640 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 KLK10O43240 276 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 PCDH7O60245 1069 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 DNAJB6O75190 326 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 PEX11AO75192 247 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 SEC22BO75396 215 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 RSL1D1O76021 490 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 MYO1DO94832 1006 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 JUNP05412 331 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 BSGP35613 385 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 MAPK12P53778 367 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 GYS2P54840 703 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 RPL38P63173 70 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 TBL3Q12788 808 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 CLN3Q13286 438 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 SLAMF1Q13291 335 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 RUNX2Q13950 521 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 ATP6AP1LQ52LC2 224 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 CCNYL2Q5T2Q4 361 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 CA13Q8N1Q1 262 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 FAM47BQ8NA70 645 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 OR2T11Q8NH01 316 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 CDC26Q8NHZ8 85 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 SNIP1Q8TAD8 396 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 PIWIL2Q8TC59 973 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 MIEF2Q96C03 454 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 CCT7Q99832 543 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 TMEM121BQ9BXQ6 578 aaPredicted RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 EBPLQ9BY08 206 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 SOX17Q9H6I2 414 aaPredicted RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 MKKSQ9NPJ1 570 aaPredicted RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 C1orf109Q9NX04 203 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 DKK4Q9UBT3 224 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 VTI1BQ9UEU0 232 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 GIMAP2Q9UG22 337 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 PADI2Q9Y2J8 665 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 PTRH2Q9Y3E5 179 aaKnown RBP14.15□□□□□ -0.14
NUP54-213ENST00000513352 SPACA6W5XKT8 324 aa14.15□□□□□ -0.14
NUP54-213ENST00000513352 APC2O95996 2303 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 ACACAQ13085 2346 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 TRPC5OSA6NMA1 111 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 C21orf140B9A014 251 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 HDAC3O15379 428 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 RRP8O43159 456 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 TMPRSS11DO60235 418 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 CDC123O75794 336 aaPredicted RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 CPN2P22792 545 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 FOLR3P41439 243 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 TSFMP43897 325 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 ARFIP1P53367 373 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 LIM2P55344 173 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 RAB38P57729 211 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 FOXL2P58012 376 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 RPS18P62269 152 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 MINDY4Q4G0A6 757 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 VWA2Q5GFL6 755 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 RGS9BPQ6ZS82 235 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 RNF165Q6ZSG1 346 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 WDR75Q8IWA0 830 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 STT3BQ8TCJ2 826 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 CHTF18Q8WVB6 975 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 THOC1Q96FV9 657 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 PPP3R2Q96LZ3 170 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 C3orf30Q96M34 536 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 MAPKAP1Q9BPZ7 522 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 NPLQ9BXD5 320 aaPredicted RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 ZNF717Q9BY31 904 aaPredicted RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 DDX31Q9H8H2 851 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 C14orf105Q9NVL8 296 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 LYARQ9NX58 379 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 PHF11Q9UIL8 331 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 KCND3Q9UK17 655 aa14.14□□□□□ -0.15
NUP54-213ENST00000513352 FARSAQ9Y285 508 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 POLR3HQ9Y535 204 aaPredicted RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 MRPS18BQ9Y676 258 aaKnown RBP14.14□□□□□ -0.15
NUP54-213ENST00000513352 A0A0A6YYD5 115 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 FAM227AF5H4B4 570 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 LSM1O15116 133 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 EDF1O60869 148 aaKnown RBP14.13□□□□□ -0.15
NUP54-213ENST00000513352 B4GALT2O60909 372 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 JRKO75564 520 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 SCELO95171 688 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ALBP02768 609 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 CD63P08962 238 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 RAB40ALP0C0E4 278 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 ZGLP1P0C6A0 271 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 FAM58BPP0C7Q3 252 aa14.13□□□□□ -0.15
NUP54-213ENST00000513352 LIFP15018 202 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms