RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SLC7A2P52569 658 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 TRA2BP62995 288 aaKnown RBP17.66■□□□□ 0.42
CLN3-206ENST00000360019 ELF3P78545 371 aaPredicted RBP17.66■□□□□ 0.42
CLN3-206ENST00000360019 FOXM1Q08050 763 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 SLAMF1Q13291 335 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 CEACAM7Q14002 265 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 SLC9A5Q14940 896 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 PIGGQ5H8A4 983 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 MANEAQ5SRI9 462 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 C6orf10Q5SRN2 563 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 HPS6Q86YV9 775 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 CARFQ8N187 725 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 FBXW8Q8N3Y1 598 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 ARHGEF39Q8N4T4 335 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 ZNF655Q8N720 491 aaPredicted RBP17.66■□□□□ 0.42
CLN3-206ENST00000360019 NAT6Q93015 286 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 PRPF18Q99633 342 aaKnown RBP17.66■□□□□ 0.42
CLN3-206ENST00000360019 INPP5KQ9BT40 448 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 PDE7BQ9NP56 450 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 SEMA5BQ9P283 1151 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 TMEM181Q9P2C4 612 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 MAN2B2Q9Y2E5 1009 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 ASB4Q9Y574 426 aa17.66■□□□□ 0.42
CLN3-206ENST00000360019 KCNH1O95259 989 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PTPN6P29350 595 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 RPL3P39023 403 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 CDKN2CP42773 168 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SEPHS1P49903 392 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SQSTM1Q13501 440 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 HEPACAMQ14CZ8 416 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 MPEG1Q2M385 716 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 MUM1Q2TAK8 710 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 DEFB134Q4QY38 66 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SNAP47Q5SQN1 464 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 WASHC2DQ5SRD0 308 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 DNAJC14Q6Y2X3 702 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 DBX2Q6ZNG2 339 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ABHD13Q7L211 337 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PRSS41Q7RTY9 318 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 R3HCC1LQ7Z5L2 792 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 TICAM1Q8IUC6 712 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 RNF148Q8N7C7 305 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SUMF1Q8NBK3 374 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 DNAJB14Q8TBM8 379 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 MIEF2Q96C03 454 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PPCDCQ96CD2 204 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 MTERF3Q96E29 417 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ZNF285Q96NJ3 590 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 BHLHE41Q9C0J9 482 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 KCNH6Q9H252 994 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 RMND5AQ9H871 391 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 COPS7BQ9H9Q2 264 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 MIEF1Q9NQG6 463 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SLC6A13Q9NSD5 602 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 DNAAF2Q9NVR5 837 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 FAM120CQ9NX05 1096 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 ADA2Q9NZK5 511 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ABCD2Q9UBJ2 740 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ATXN7L1Q9ULK2 861 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 ERVK-11Q9UQG0 969 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ATG4BQ9Y4P1 393 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 CUL9Q8IWT3 2517 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SCN3AQ9NY46 2000 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SRPX2O60687 465 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 RETP07949 1114 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 HOXB9P17482 250 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 ALOX12P18054 663 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 EFNA1P20827 205 aaPredicted RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 CCL7P80098 99 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SUZ12Q15022 739 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 PRTGQ2VWP7 1150 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 NANOGP8Q6NSW7 305 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PRSS42Q7Z5A4 293 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 MSRB3Q8IXL7 192 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SLC15A3Q8IY34 581 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 CLECL1Q8IZS7 167 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 UCN3Q969E3 161 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 ITCHQ96J02 903 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PAIP1Q9H074 479 aaKnown RBP17.65■□□□□ 0.42
CLN3-206ENST00000360019 NANOGQ9H9S0 305 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 CMTM6Q9NX76 183 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SLC25A37Q9NYZ2 338 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 VAPAQ9P0L0 249 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 PLCL2Q9UPR0 1127 aa17.65■□□□□ 0.42
CLN3-206ENST00000360019 SPTBP11277 2137 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 TRBV5-3A0A0A0MS03 114 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 NME4O00746 187 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 RPLP0P05388 317 aaKnown RBP17.64■□□□□ 0.41
CLN3-206ENST00000360019 DAB2P98082 770 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 KCNAB1Q14722 419 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 SF3A2Q15428 464 aaKnown RBP17.64■□□□□ 0.41
CLN3-206ENST00000360019 GTDC1Q4AE62 458 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 RABL3Q5HYI8 236 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 LRIF1Q5T3J3 769 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 NDUFAF5Q5TEU4 345 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 PRMT9Q6P2P2 845 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 ZNF574Q6ZN55 896 aaPredicted RBP17.64■□□□□ 0.41
CLN3-206ENST00000360019 PRR23CQ6ZRP0 262 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 PDSS2Q86YH6 399 aa17.64■□□□□ 0.41
CLN3-206ENST00000360019 IFI44Q8TCB0 444 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms