RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 COPG2Q9UBF2 871 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 OSGIN2Q9Y236 505 aa17.93■□□□□ 0.46
CCDC28A-203ENST00000617445 MYO7BQ6PIF6 2116 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 A0A088AWK7 358 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 CXorf49A8MYA2 514 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 STSP08842 583 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 CCDC166P0CW27 439 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF10P21506 573 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 SPRP35270 261 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 MRPS25P82663 173 aaKnown RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 HYAL2Q12891 473 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 GRTP1Q5TC63 336 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 TMIGD1Q6UXZ0 262 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 SHISA5Q8N114 240 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 HORMAD2Q8N7B1 307 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 PTCHD1Q96NR3 888 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 UTP23Q9BRU9 249 aaKnown RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 NPLQ9BXD5 320 aaPredicted RBP17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 RBCK1Q9BYM8 510 aa17.92■□□□□ 0.46
CCDC28A-203ENST00000617445 CLGNO14967 610 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 LRRTM2O43300 516 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 B4GALT2O60909 372 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 F10P00742 488 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 TDGF1P3P51864 188 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 PLTPP55058 493 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 SLC26A5P58743 744 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 RAB8AP61006 207 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF766Q5HY98 468 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 BEST3Q8N1M1 668 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 TSLPQ969D9 159 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 GAL3ST3Q96A11 431 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 FAR2Q96K12 515 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 UBXN10Q96LJ8 280 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 KLHL31Q9H511 634 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 PRDM9Q9NQV7 894 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 DNAJC11Q9NVH1 559 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 WWOXQ9NZC7 414 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 MMACHCQ9Y4U1 282 aa17.91■□□□□ 0.46
CCDC28A-203ENST00000617445 SYNDIG1LA6NDD5 238 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 CLEC3AO75596 197 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 STK16O75716 305 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 PIAS1O75925 651 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 CD1DP15813 335 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 STX2P32856 288 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 HNF4AP41235 474 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 GDF5P43026 501 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 RAB10P61026 200 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 OLR1P78380 273 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 C2orf54Q08AI8 447 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 NAB1Q13506 487 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 ZKSCAN8Q15776 578 aaPredicted RBP17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 TOR1AIP1Q5JTV8 583 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 ZNF572Q7Z3I7 529 aaPredicted RBP17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 CRLF3Q8IUI8 442 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 ELP5Q8TE02 316 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 ADAMTS18Q8TE60 1221 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 KIAA1191Q96A73 305 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 CAB39LQ9H9S4 337 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 CACNA1DQ01668 2161 aa17.9■□□□□ 0.46
CCDC28A-203ENST00000617445 IGKV3D-11A0A0A0MRZ8 115 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 TCRBV16S1A1N1A0A5B0 115 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 A1L4Q6 167 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 LRIT2A6NDA9 550 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 ANKDD1BA6NHY2 528 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 NCF1BA6NI72 391 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 NCF1CA8MVU1 366 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 TAPBPO15533 448 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 PHGDHO43175 533 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 DNAJB6O75190 326 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 MLYCDO95822 493 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 B3GALT4O96024 378 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 S100BP04271 92 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 NCF1P14598 390 aaPredicted RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 CD46P15529 392 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 MAGEA4P43358 317 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 GPX6P59796 221 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 BTN3A2P78410 334 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 LAPTM5Q13571 262 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 TUBA3CQ13748 450 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 SLBPQ14493 270 aaKnown RBP eCLIP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 TUBA3EQ6PEY2 450 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 CCDC91Q7Z6B0 441 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 RPS19BP1Q86WX3 136 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 CTAGE3PQ8IX95 158 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 PDPRQ8NCN5 879 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 MDS2Q8NDY4 140 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 STAG3L4Q8TBR4 150 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 FBXO25Q8TCJ0 367 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 RELTQ969Z4 430 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 WDR34Q96EX3 536 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 EFCAB11Q9BUY7 163 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 CD274Q9NZQ7 290 aa17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 PTBP2Q9UKA9 531 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-203ENST00000617445 TEX15Q9BXT5 2789 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CTAGE15A4D2H0 777 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 SAGE2PA6NJ88 616 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CLDN4O14493 209 aa17.88■□□□□ 0.45
CCDC28A-203ENST00000617445 CLDN1O95832 211 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms