RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SAP30O75446 220 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 NADKO95544 446 aaPredicted RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 CXCL10P02778 98 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 GHRP10912 638 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 ZNF18P17022 549 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 DESP17661 470 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 DCDC1P59894 354 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 GMFBP60983 142 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 FHL1Q13642 323 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 KIAA1644Q3SXP7 199 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 CCDC40Q4G0X9 1142 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 TAF1BQ53T94 588 aaPredicted RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 ZNF776Q68DI1 518 aaPredicted RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 SLC27A4Q6P1M0 643 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 LEKR1Q6ZMV7 388 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 C15orf52Q6ZUT6 534 aaKnown RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 SH2D5Q6ZV89 423 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 TRMT11Q7Z4G4 463 aaKnown RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 ZNF444Q8N0Y2 327 aaPredicted RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 MARVELD2Q8N4S9 558 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 TRPV3Q8NET8 790 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 DYRK2Q92630 601 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 BPIFA2Q96DR5 249 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 UBAC1Q9BSL1 405 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 ABCG4Q9H172 646 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 MTIF3Q9H2K0 278 aaKnown RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 DPEP3Q9H4B8 488 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 DCLRE1BQ9H816 532 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 ZNF556Q9HAH1 456 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 INTS10Q9NVR2 710 aaKnown RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 HACD3Q9P035 362 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 ZNF624Q9P2J8 865 aaPredicted RBP6.53□□□□□ -1.36
NUP54-215ENST00000514313 EPS15L1Q9UBC2 864 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 EXOC7Q9UPT5 735 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 NUDCQ9Y266 331 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 ETV7Q9Y603 341 aa6.53□□□□□ -1.36
NUP54-215ENST00000514313 KLF11O14901 512 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 SYT7O43581 403 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 SEC24AO95486 1093 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 PTBP3O95758 552 aaKnown RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 CAVIN2O95810 425 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 CLPTM1O96005 669 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 PDGFBP01127 241 aaPredicted RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 SLC2A2P11168 524 aaPredicted RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 EZRP15311 586 aaKnown RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 ITGB6P18564 788 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 KCNK10P57789 538 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 HTD2P86397 168 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 SRSF9Q13242 221 aaKnown RBP eCLIP6.52□□□□□ -1.37
NUP54-215ENST00000514313 GPR50Q13585 617 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 RBBP5Q15291 538 aaKnown RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 STX1AQ16623 288 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 LRRC37A5PQ49AS3 106 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 GTDC1Q4AE62 458 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 C12orf60Q5U649 245 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 GPRC5AQ8NFJ5 357 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 UBTD2Q8WUN7 234 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 KCNK16Q96T55 309 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 ATP13A3Q9H7F0 1226 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.52□□□□□ -1.37
NUP54-215ENST00000514313 TAS2R3Q9NYW6 316 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 POLKQ9UBT6 870 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 PILRAQ9UKJ1 303 aa6.52□□□□□ -1.37
NUP54-215ENST00000514313 ELF5Q9UKW6 265 aaPredicted RBP6.52□□□□□ -1.37
NUP54-215ENST00000514313 ARID2Q68CP9 1835 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 SERINC4A6NH21 518 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 SMIM1B2RUZ4 78 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 CYTIPO60759 359 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 TRMUO75648 421 aaKnown RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 TRIM16O95361 564 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 PGK2P07205 417 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 FAM157CP0CG43 387 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 CYP3A5P20815 502 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 SLC1A3P43003 542 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 NSFP46459 744 aaKnown RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 SP3Q02447 781 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 CEACAM7Q14002 265 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 TMEM132DQ14C87 1099 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 KARSQ15046 597 aaKnown RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 SPHARQ15513 63 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 ZNF672Q499Z4 452 aaPredicted RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 FGD3Q5JSP0 725 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 SLC25A47Q6Q0C1 308 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 RBM43Q6ZSC3 357 aaKnown RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 SLC26A9Q7LBE3 791 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 TAF8Q7Z7C8 310 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 NLRP14Q86W24 1093 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 TEX26Q8N6G2 289 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 TCEANCQ8N8B7 351 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 CD99L2Q8TCZ2 262 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 GIMAP5Q96F15 307 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 LMLNQ96KR4 655 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 LIN28AQ9H9Z2 209 aaKnown RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 ZNF334Q9HCZ1 680 aaPredicted RBP6.51□□□□□ -1.37
NUP54-215ENST00000514313 EPHA6Q9UF33 1036 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 POMT2Q9UKY4 750 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 ERVK-19Q9WJR5 959 aa6.51□□□□□ -1.37
NUP54-215ENST00000514313 STK36Q9NRP7 1315 aa6.5□□□□□ -1.37
NUP54-215ENST00000514313 RASGRF2O14827 1237 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms