RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ANKHQ9HCJ1 492 aa14.24□□□□□ -0.13
NUP54-213ENST00000513352 MRPS2Q9Y399 296 aaKnown RBP14.24□□□□□ -0.13
NUP54-213ENST00000513352 MAU2Q9Y6X3 613 aa14.24□□□□□ -0.13
NUP54-213ENST00000513352 A0A0A6YYC8 382 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 TMEM233B4DJY2 109 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 I3L1I5 382 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 ULK1O75385 1050 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 MED26O95402 600 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 KLK3P07288 261 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 CD82P27701 267 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 ARRB2P32121 409 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 PLA2G16P53816 162 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 TGM3Q08188 693 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 GALNT1Q10472 559 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 SLC9A5Q14940 896 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 HERC3Q15034 1050 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 TBC1D25Q3MII6 688 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 MANEAQ5SRI9 462 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 RHBDD2Q6NTF9 364 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 TMEM214Q6NUQ4 689 aaKnown RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 TRIM40Q6P9F5 258 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 AFAP1L2Q8N4X5 818 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 OR6Y1Q8NGX8 325 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 PROKR1Q8TCW9 393 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 MR1Q95460 341 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 MMABQ96EY8 250 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 FAR2Q96K12 515 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 ZNF578Q96N58 590 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 YIPF2Q9BWQ6 316 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 ILKAPQ9H0C8 392 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 COPS7BQ9H9Q2 264 aaPredicted RBP14.23□□□□□ -0.13
NUP54-213ENST00000513352 SLC12A4Q9UP95 1085 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 TRAF6Q9Y4K3 522 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 CACNA1AO00555 2505 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 SEC16AO15027 2179 aa14.23□□□□□ -0.13
NUP54-213ENST00000513352 FER1L5A0AVI2 2057 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 LRIT2A6NDA9 550 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ZNF860A6NHJ4 632 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 MEN1O00255 615 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 FOXE1O00358 373 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 RAD1O60671 282 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 SKAP2O75563 359 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 KLHL18O94889 574 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 DLGAP3O95886 979 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 B3GALT4O96024 378 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 CCNYL3P0C7X3 344 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ALOX12P18054 663 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 AGXTP21549 392 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 FBLP22087 321 aaKnown RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 PTX3P26022 381 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 OR1D4P47884 311 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 AVPR1BP47901 424 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 EMP3P54852 163 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 BTN3A2P78410 334 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ABHD18Q0P651 414 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 HYAL2Q12891 473 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ABRAXAS2Q15018 415 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 DEFB134Q4QY38 66 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 C10orf62Q5T681 223 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 ARHGAP40Q5TG30 622 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 KHDRBS2Q5VWX1 349 aaKnown RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 KANK2Q63ZY3 851 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 PRSS41Q7RTY9 318 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 DDIASQ8IXT1 998 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 NLGN4XQ8N0W4 816 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 CLYBLQ8N0X4 340 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ESX1Q8N693 406 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 ZNF781Q8N8C0 355 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 SLC38A9Q8NBW4 561 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 NLGN4YQ8NFZ3 816 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 OR9A4Q8NGU2 314 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 UTP15Q8TED0 518 aaKnown RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 COL26A1Q96A83 441 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 MS4A6EQ96DS6 147 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 NAF1Q96HR8 494 aaKnown RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 SERPINI1Q99574 410 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 C17orf62Q9BQA9 187 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 CCDC86Q9H6F5 360 aaKnown RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 THAP1Q9NVV9 213 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 GPN3Q9UHW5 284 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 ZDHHC2Q9UIJ5 367 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 CDC14AQ9UNH5 594 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 RAP2CQ9Y3L5 183 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 TSC22D4Q9Y3Q8 395 aa14.22□□□□□ -0.13
NUP54-213ENST00000513352 TMEM184BQ9Y519 407 aaPredicted RBP14.22□□□□□ -0.13
NUP54-213ENST00000513352 NCOR2Q9Y618 2525 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 AHCTF1Q8WYP5 2266 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 A0A088AWK7 358 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 C9J4A7 227 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 SGK494L7N484 410 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 SNUPNO95149 360 aaKnown RBP14.21□□□□□ -0.13
NUP54-213ENST00000513352 KITP10721 976 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 ZNF10P21506 573 aaPredicted RBP14.21□□□□□ -0.13
NUP54-213ENST00000513352 SSR2P43308 183 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 PCBP4P57723 403 aaKnown RBP14.21□□□□□ -0.13
NUP54-213ENST00000513352 SNRPNP63162 240 aaKnown RBP14.21□□□□□ -0.13
NUP54-213ENST00000513352 SKP1P63208 163 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 DCDP81605 110 aaKnown RBP14.21□□□□□ -0.13
NUP54-213ENST00000513352 BTKQ06187 659 aa14.21□□□□□ -0.13
NUP54-213ENST00000513352 CSTF3Q12996 717 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms