RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 ANO8Q9HCE9 1232 aaPredicted RBP20.72■□□□□ 0.91
CLN6-216ENST00000636876 USP16Q9Y5T5 823 aa20.72■□□□□ 0.91
CLN6-216ENST00000636876 CNTNAP4Q9C0A0 1308 aa20.72■□□□□ 0.91
CLN6-216ENST00000636876 LAMB4A4D0S4 1761 aa20.72■□□□□ 0.91
CLN6-216ENST00000636876 HOXB7P09629 217 aa20.71■□□□□ 0.91
CLN6-216ENST00000636876 CRKLP46109 303 aaKnown RBP20.71■□□□□ 0.91
CLN6-216ENST00000636876 RC3H1Q5TC82 1133 aaKnown RBP20.71■□□□□ 0.91
CLN6-216ENST00000636876 DUSP27Q5VZP5 1158 aa20.71■□□□□ 0.91
CLN6-216ENST00000636876 EXOSC9Q06265 439 aaKnown RBP20.7■□□□□ 0.9
CLN6-216ENST00000636876 ZNF827Q17R98 1081 aa20.7■□□□□ 0.9
CLN6-216ENST00000636876 AKT1S1Q96B36 256 aa20.7■□□□□ 0.9
CLN6-216ENST00000636876 CCDC87Q9NVE4 849 aa20.7■□□□□ 0.9
CLN6-216ENST00000636876 SOS1Q07889 1333 aaPredicted RBP20.7■□□□□ 0.9
CLN6-216ENST00000636876 MYH14Q7Z406 1995 aaKnown RBP20.7■□□□□ 0.9
CLN6-216ENST00000636876 NBPF14Q5TI25 921 aa20.69■□□□□ 0.9
CLN6-216ENST00000636876 INTS5Q6P9B9 1019 aaKnown RBP20.69■□□□□ 0.9
CLN6-216ENST00000636876 TSPYL6Q8N831 410 aa20.69■□□□□ 0.9
CLN6-216ENST00000636876 AK7Q96M32 723 aa20.69■□□□□ 0.9
CLN6-216ENST00000636876 STK32BQ9NY57 414 aa20.69■□□□□ 0.9
CLN6-216ENST00000636876 ELL2O00472 640 aaPredicted RBP20.68■□□□□ 0.9
CLN6-216ENST00000636876 A1BGP04217 495 aa20.67■□□□□ 0.9
CLN6-216ENST00000636876 SLC15A2Q16348 729 aa20.67■□□□□ 0.9
CLN6-216ENST00000636876 TWISTNBQ3B726 338 aaPredicted RBP20.67■□□□□ 0.9
CLN6-216ENST00000636876 GNPATO15228 680 aa20.66■□□□□ 0.9
CLN6-216ENST00000636876 EIF2S2P20042 333 aaKnown RBP20.66■□□□□ 0.9
CLN6-216ENST00000636876 HDGFL1Q5TGJ6 251 aa20.66■□□□□ 0.9
CLN6-216ENST00000636876 ZBTB1Q9Y2K1 713 aa20.66■□□□□ 0.9
CLN6-216ENST00000636876 UBR3Q6ZT12 1888 aa20.65■□□□□ 0.9
CLN6-216ENST00000636876 ERBB4Q15303 1308 aa20.65■□□□□ 0.9
CLN6-216ENST00000636876 RPS6KA4O75676 772 aa20.65■□□□□ 0.9
CLN6-216ENST00000636876 TFCP2L1Q9NZI6 479 aa20.65■□□□□ 0.9
CLN6-216ENST00000636876 TUBGCP6Q96RT7 1819 aa20.64■□□□□ 0.9
CLN6-216ENST00000636876 CANXP27824 592 aaKnown RBP20.64■□□□□ 0.89
CLN6-216ENST00000636876 NECTIN2Q92692 538 aa20.64■□□□□ 0.89
CLN6-216ENST00000636876 NBPF26B4DH59 902 aa20.63■□□□□ 0.89
CLN6-216ENST00000636876 VAMP4O75379 141 aa20.63■□□□□ 0.89
CLN6-216ENST00000636876 NBPF10Q6P3W6 841 aaKnown RBP20.63■□□□□ 0.89
CLN6-216ENST00000636876 AMIGO3Q86WK7 504 aa20.63■□□□□ 0.89
CLN6-216ENST00000636876 NBPF15Q8N660 670 aa20.63■□□□□ 0.89
CLN6-216ENST00000636876 CHMP4AQ9BY43 222 aa20.63■□□□□ 0.89
CLN6-216ENST00000636876 RTCBQ9Y3I0 505 aaKnown RBP20.63■□□□□ 0.89
CLN6-216ENST00000636876 QSER1Q2KHR3 1735 aa20.62■□□□□ 0.89
CLN6-216ENST00000636876 SSFA2P28290 1259 aa20.62■□□□□ 0.89
CLN6-216ENST00000636876 PIP4K2AP48426 406 aaPredicted RBP20.62■□□□□ 0.89
CLN6-216ENST00000636876 IL6STP40189 918 aaPredicted RBP20.61■□□□□ 0.89
CLN6-216ENST00000636876 EIF5P55010 431 aaKnown RBP20.61■□□□□ 0.89
CLN6-216ENST00000636876 PDIA6Q15084 440 aa20.61■□□□□ 0.89
CLN6-216ENST00000636876 CCDC30Q5VVM6 783 aa20.61■□□□□ 0.89
CLN6-216ENST00000636876 SMIM5Q71RC9 77 aa20.61■□□□□ 0.89
CLN6-216ENST00000636876 PNPLA7Q6ZV29 1317 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 CASZ1Q86V15 1759 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.6■□□□□ 0.89
CLN6-216ENST00000636876 PHF14O94880 888 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 ADRA2BP18089 450 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 FLAD1Q8NFF5 587 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 DDX21Q9NR30 783 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN6-216ENST00000636876 CHPF2Q9P2E5 772 aa20.6■□□□□ 0.89
CLN6-216ENST00000636876 CT47B1P0C2W7 299 aaPredicted RBP20.59■□□□□ 0.89
CLN6-216ENST00000636876 PROSER3Q2NL68 480 aa20.59■□□□□ 0.89
CLN6-216ENST00000636876 DBF4Q9UBU7 674 aaPredicted RBP20.59■□□□□ 0.89
CLN6-216ENST00000636876 COL15A1P39059 1388 aa20.59■□□□□ 0.89
CLN6-216ENST00000636876 ANXA1P04083 346 aa20.58■□□□□ 0.89
CLN6-216ENST00000636876 MYL6BP14649 208 aa20.58■□□□□ 0.89
CLN6-216ENST00000636876 TRAPPC3LQ5T215 181 aa20.57■□□□□ 0.88
CLN6-216ENST00000636876 LRP10Q7Z4F1 713 aa20.57■□□□□ 0.88
CLN6-216ENST00000636876 COL23A1Q86Y22 540 aaPredicted RBP20.57■□□□□ 0.88
CLN6-216ENST00000636876 ARHGEF1Q92888 912 aaKnown RBP20.57■□□□□ 0.88
CLN6-216ENST00000636876 STK31Q9BXU1 1019 aa20.57■□□□□ 0.88
CLN6-216ENST00000636876 ZNF330Q9Y3S2 320 aaPredicted RBP20.57■□□□□ 0.88
CLN6-216ENST00000636876 A0A087WZG4 1122 aa20.56■□□□□ 0.88
CLN6-216ENST00000636876 TCERG1O14776 1098 aaKnown RBP20.56■□□□□ 0.88
CLN6-216ENST00000636876 NPM2Q86SE8 214 aaKnown RBP20.56■□□□□ 0.88
CLN6-216ENST00000636876 ZNF428Q96B54 188 aa20.56■□□□□ 0.88
CLN6-216ENST00000636876 HYPKQ9NX55 129 aa20.55■□□□□ 0.88
CLN6-216ENST00000636876 C4AP0C0L4 1744 aa20.55■□□□□ 0.88
CLN6-216ENST00000636876 MSH5O43196 834 aa20.54■□□□□ 0.88
CLN6-216ENST00000636876 RFC4P35249 363 aa20.54■□□□□ 0.88
CLN6-216ENST00000636876 DZIP3Q86Y13 1208 aaKnown RBP20.53■□□□□ 0.88
CLN6-216ENST00000636876 PDGFDQ9GZP0 370 aaPredicted RBP20.53■□□□□ 0.88
CLN6-216ENST00000636876 CACNA1FO60840 1977 aa20.53■□□□□ 0.88
CLN6-216ENST00000636876 SLC4A2P04920 1241 aa20.52■□□□□ 0.88
CLN6-216ENST00000636876 ALDH1L2Q3SY69 923 aa20.52■□□□□ 0.88
CLN6-216ENST00000636876 XAGE3Q8WTP9 111 aa20.52■□□□□ 0.88
CLN6-216ENST00000636876 SRP68Q9UHB9 627 aaKnown RBP20.52■□□□□ 0.88
CLN6-216ENST00000636876 NARFQ9UHQ1 456 aa20.52■□□□□ 0.88
CLN6-216ENST00000636876 TBC1D2BQ9UPU7 963 aa20.52■□□□□ 0.88
CLN6-216ENST00000636876 USP42Q9H9J4 1324 aaKnown RBP20.52■□□□□ 0.87
CLN6-216ENST00000636876 TTLL7Q6ZT98 887 aa20.51■□□□□ 0.87
CLN6-216ENST00000636876 COPS6Q7L5N1 327 aa20.51■□□□□ 0.87
CLN6-216ENST00000636876 SSH1Q8WYL5 1049 aa20.51■□□□□ 0.87
CLN6-216ENST00000636876 ARXQ96QS3 562 aa20.51■□□□□ 0.87
CLN6-216ENST00000636876 ZPR1O75312 459 aa20.5■□□□□ 0.87
CLN6-216ENST00000636876 CAMTA2O94983 1202 aa20.5■□□□□ 0.87
CLN6-216ENST00000636876 RARSP54136 660 aaKnown RBP20.5■□□□□ 0.87
CLN6-216ENST00000636876 SLC16A10Q8TF71 515 aa20.5■□□□□ 0.87
CLN6-216ENST00000636876 PHAXQ9H814 394 aaKnown RBP20.5■□□□□ 0.87
CLN6-216ENST00000636876 SCN7AQ01118 1682 aa20.49■□□□□ 0.87
CLN6-216ENST00000636876 AIMP1Q12904 312 aaKnown RBP20.49■□□□□ 0.87
CLN6-216ENST00000636876 USPL1Q5W0Q7 1092 aa20.49■□□□□ 0.87
CLN6-216ENST00000636876 KIF6Q6ZMV9 814 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms