RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 CANXP27824 592 aaKnown RBP18.02■□□□□ 0.47
CLN3-242ENST00000635958 FAM182BQ5T319 152 aa18.02■□□□□ 0.47
CLN3-242ENST00000635958 FAM196AQ6ZSG2 479 aa18.02■□□□□ 0.47
CLN3-242ENST00000635958 ERICH6Q7L0X2 663 aa18.02■□□□□ 0.47
CLN3-242ENST00000635958 SMARCC1Q92922 1105 aaPredicted RBP18.02■□□□□ 0.47
CLN3-242ENST00000635958 TEX13AQ9BXU3 409 aaPredicted RBP18.02■□□□□ 0.47
CLN3-242ENST00000635958 C5P01031 1676 aa18.01■□□□□ 0.47
CLN3-242ENST00000635958 NECTIN2Q92692 538 aa18.01■□□□□ 0.47
CLN3-242ENST00000635958 PTPRCP08575 1304 aa18.01■□□□□ 0.47
CLN3-242ENST00000635958 NHSQ6T4R5 1651 aa18.01■□□□□ 0.47
CLN3-242ENST00000635958 PDIA6Q15084 440 aa18■□□□□ 0.47
CLN3-242ENST00000635958 DDX21Q9NR30 783 aaKnown RBP eCLIP18■□□□□ 0.47
CLN3-242ENST00000635958 CHPF2Q9P2E5 772 aa18■□□□□ 0.47
CLN3-242ENST00000635958 SBF2Q86WG5 1849 aa18■□□□□ 0.47
CLN3-242ENST00000635958 G2E3Q7L622 706 aa18■□□□□ 0.47
CLN3-242ENST00000635958 SLC4A9Q96Q91 983 aa18■□□□□ 0.47
CLN3-242ENST00000635958 API5Q9BZZ5 524 aaKnown RBP18■□□□□ 0.47
CLN3-242ENST00000635958 ERBB4Q15303 1308 aa18■□□□□ 0.47
CLN3-242ENST00000635958 DZIP1LQ8IYY4 767 aaKnown RBP17.99■□□□□ 0.47
CLN3-242ENST00000635958 TNNQ9UQP3 1299 aa17.99■□□□□ 0.47
CLN3-242ENST00000635958 RLBP1P12271 317 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 PTF1AQ7RTS3 328 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 UPF1Q92900 1129 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLN3-242ENST00000635958 RBM42Q9BTD8 480 aaKnown RBP17.98■□□□□ 0.47
CLN3-242ENST00000635958 BCL11BQ9C0K0 894 aaPredicted RBP17.98■□□□□ 0.47
CLN3-242ENST00000635958 HYPKQ9NX55 129 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 LAMB4A4D0S4 1761 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 FLIIQ13045 1269 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 PANK1Q8TE04 598 aa17.98■□□□□ 0.47
CLN3-242ENST00000635958 PALLDQ8WX93 1383 aa17.97■□□□□ 0.47
CLN3-242ENST00000635958 LRP10Q7Z4F1 713 aa17.97■□□□□ 0.47
CLN3-242ENST00000635958 ABCC4O15439 1325 aa17.96■□□□□ 0.47
CLN3-242ENST00000635958 LOC102724428A0A0B4J2F2 783 aa17.96■□□□□ 0.47
CLN3-242ENST00000635958 SIK1P57059 783 aa17.96■□□□□ 0.47
CLN3-242ENST00000635958 DNAJC10Q8IXB1 793 aa17.96■□□□□ 0.47
CLN3-242ENST00000635958 CRBNQ96SW2 442 aa17.96■□□□□ 0.47
CLN3-242ENST00000635958 STARD3NLO95772 234 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 PROSER3Q2NL68 480 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 FTSJ3Q8IY81 847 aaKnown RBP17.95■□□□□ 0.46
CLN3-242ENST00000635958 CLUAP1Q96AJ1 413 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 PHAXQ9H814 394 aaKnown RBP17.95■□□□□ 0.46
CLN3-242ENST00000635958 ZNF831Q5JPB2 1677 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 CICQ96RK0 1608 aaPredicted RBP17.95■□□□□ 0.46
CLN3-242ENST00000635958 BTAF1O14981 1849 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 EXOC6Q8TAG9 804 aa17.95■□□□□ 0.46
CLN3-242ENST00000635958 CYP19A1P11511 503 aaPredicted RBP17.94■□□□□ 0.46
CLN3-242ENST00000635958 NBPF26B4DH59 902 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 MSH5O43196 834 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 ANXA1P04083 346 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 A1BGP04217 495 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 NBPF14Q5TI25 921 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 NBPF10Q6P3W6 841 aaKnown RBP17.93■□□□□ 0.46
CLN3-242ENST00000635958 NBPF15Q8N660 670 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 COG6Q9Y2V7 657 aa17.93■□□□□ 0.46
CLN3-242ENST00000635958 FKBP5Q13451 457 aaPredicted RBP17.93■□□□□ 0.46
CLN3-242ENST00000635958 MVPQ14764 893 aaKnown RBP17.93■□□□□ 0.46
CLN3-242ENST00000635958 INTS3Q68E01 1043 aaKnown RBP17.93■□□□□ 0.46
CLN3-242ENST00000635958 ATP6V1AP38606 617 aa17.92■□□□□ 0.46
CLN3-242ENST00000635958 TMEM57Q8N5G2 664 aa17.92■□□□□ 0.46
CLN3-242ENST00000635958 TJP1Q07157 1748 aa17.92■□□□□ 0.46
CLN3-242ENST00000635958 EP400Q96L91 3159 aa17.91■□□□□ 0.46
CLN3-242ENST00000635958 AAMPQ13685 434 aa17.91■□□□□ 0.46
CLN3-242ENST00000635958 ITPK1Q13572 414 aa17.91■□□□□ 0.46
CLN3-242ENST00000635958 MYL6BP14649 208 aa17.9■□□□□ 0.46
CLN3-242ENST00000635958 DDX19BQ9UMR2 479 aa17.9■□□□□ 0.46
CLN3-242ENST00000635958 TRIM37O94972 964 aa17.89■□□□□ 0.45
CLN3-242ENST00000635958 KSR2Q6VAB6 950 aa17.89■□□□□ 0.45
CLN3-242ENST00000635958 COPS6Q7L5N1 327 aa17.89■□□□□ 0.45
CLN3-242ENST00000635958 PI4KAP2A4QPH2 592 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 F6X3S4 739 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 DDX58O95786 925 aaKnown RBP17.88■□□□□ 0.45
CLN3-242ENST00000635958 B4GALNT3Q6L9W6 998 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 PI4KAP1Q8N8J0 262 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 XAGE3Q8WTP9 111 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 LY75O60449 1722 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 ADCY9O60503 1353 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 PIP4K2AP48426 406 aaPredicted RBP17.88■□□□□ 0.45
CLN3-242ENST00000635958 CCT4P50991 539 aaKnown RBP17.88■□□□□ 0.45
CLN3-242ENST00000635958 INTS5Q6P9B9 1019 aaKnown RBP17.88■□□□□ 0.45
CLN3-242ENST00000635958 ITPRIPQ8IWB1 547 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 PXDNLA1KZ92 1463 aa17.88■□□□□ 0.45
CLN3-242ENST00000635958 DNAAF4Q8WXU2 420 aa17.87■□□□□ 0.45
CLN3-242ENST00000635958 ZBTB7BO15156 539 aaPredicted RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 IL6STP40189 918 aaPredicted RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 ANKRD13DQ6ZTN6 518 aa17.86■□□□□ 0.45
CLN3-242ENST00000635958 CCDC87Q9NVE4 849 aa17.86■□□□□ 0.45
CLN3-242ENST00000635958 RREB1Q92766 1687 aa17.86■□□□□ 0.45
CLN3-242ENST00000635958 CRKLP46109 303 aaKnown RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 AIMP1Q12904 312 aaKnown RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 RC3H1Q5TC82 1133 aaKnown RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 CCDC136Q96JN2 1154 aa17.86■□□□□ 0.45
CLN3-242ENST00000635958 CHMP4BQ9H444 224 aaKnown RBP17.86■□□□□ 0.45
CLN3-242ENST00000635958 ZBTB1Q9Y2K1 713 aa17.86■□□□□ 0.45
CLN3-242ENST00000635958 COL5A3P25940 1745 aaPredicted RBP17.85■□□□□ 0.45
CLN3-242ENST00000635958 PLSCR1O15162 318 aa17.85■□□□□ 0.45
CLN3-242ENST00000635958 PLBD2Q8NHP8 589 aa17.85■□□□□ 0.45
CLN3-242ENST00000635958 ZBTB40Q9NUA8 1239 aa17.85■□□□□ 0.45
CLN3-242ENST00000635958 CCNL1Q9UK58 526 aaPredicted RBP17.85■□□□□ 0.45
CLN3-242ENST00000635958 MAP3K2Q9Y2U5 619 aa17.85■□□□□ 0.45
CLN3-242ENST00000635958 ATP10DQ9P241 1426 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms