RNA–Protein interactions for RNA: ENST00000629427.2

SHPRH-211, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SHPRH, Length 7,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-211ENST00000629427 CCDC8Q9H0W5 538 aaPredicted RBP13.66□□□□□ -0.22
SHPRH-211ENST00000629427 DYDC1Q8WWB3 177 aa13.66□□□□□ -0.22
SHPRH-211ENST00000629427 CATIPQ7Z7H3 387 aa13.66□□□□□ -0.22
SHPRH-211ENST00000629427 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.66□□□□□ -0.22
SHPRH-211ENST00000629427 FERMT2Q96AC1 680 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 EXOC5O00471 708 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 IFIT3O14879 490 aaKnown RBP13.65□□□□□ -0.22
SHPRH-211ENST00000629427 CCDC178Q5BJE1 867 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 FERMT3Q86UX7 667 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 FOXO3O43524 673 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 MX1P20591 662 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 VAT1LQ9HCJ6 419 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 VPS36Q86VN1 386 aa13.65□□□□□ -0.22
SHPRH-211ENST00000629427 PDIA4P13667 645 aaKnown RBP13.64□□□□□ -0.23
SHPRH-211ENST00000629427 A0A087WZG4 1122 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 ZNF622Q969S3 477 aaKnown RBP eCLIP13.64□□□□□ -0.235e-7■□□□□ 11.3
SHPRH-211ENST00000629427 BAG4O95429 457 aaKnown RBP13.64□□□□□ -0.23
SHPRH-211ENST00000629427 NESP48681 1621 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 MAP2K1Q02750 393 aaPredicted RBP13.64□□□□□ -0.23
SHPRH-211ENST00000629427 NBPF8Q3BBV2 869 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 CCDC144CPQ8IYA2 1237 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 HYPKQ9NX55 129 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 CASQ1P31415 396 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 FAM135AQ9P2D6 1515 aa13.64□□□□□ -0.23
SHPRH-211ENST00000629427 SAMM50Q9Y512 469 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 CC2D2AQ9P2K1 1620 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 GOLGA6L10A0A0M3HER8 536 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 MACROD2A1Z1Q3 448 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 TNNT1P13805 278 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 GSTTP1A0A1W2PQM5 241 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 PHAXQ9H814 394 aaKnown RBP13.63□□□□□ -0.23
SHPRH-211ENST00000629427 IFT140Q96RY7 1462 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 SYCE3A1L190 88 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 RFC4P35249 363 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 DNA2P51530 1060 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 CCT2P78371 535 aaKnown RBP13.63□□□□□ -0.23
SHPRH-211ENST00000629427 PSMD1Q99460 953 aa13.63□□□□□ -0.23
SHPRH-211ENST00000629427 CFAP65Q6ZU64 1925 aaKnown RBP13.63□□□□□ -0.23
SHPRH-211ENST00000629427 HMGB1P09429 215 aaKnown RBP13.63□□□□□ -0.23
SHPRH-211ENST00000629427 RNF41Q9H4P4 317 aaPredicted RBP13.63□□□□□ -0.23
SHPRH-211ENST00000629427 KIF14Q15058 1648 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 DAPK1P53355 1430 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 UQCRHLA0A096LP55 91 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 F6X3S4 739 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 UQCRHP07919 91 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 CA8P35219 290 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 CTNNA2P26232 953 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 TROQ12816 1431 aaPredicted RBP13.62□□□□□ -0.23
SHPRH-211ENST00000629427 CCDC194A0A1B0GVG4 234 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 DDX46Q7L014 1031 aaKnown RBP13.62□□□□□ -0.23
SHPRH-211ENST00000629427 BCCIPQ9P287 314 aaKnown RBP eCLIP13.62□□□□□ -0.23
SHPRH-211ENST00000629427 BRPF3Q9ULD4 1205 aa13.62□□□□□ -0.23
SHPRH-211ENST00000629427 GOLGA8BA8MQT2 603 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 NUP88Q99567 741 aaPredicted RBP13.61□□□□□ -0.23
SHPRH-211ENST00000629427 BACH2Q9BYV9 841 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 PRKCSHP14314 528 aaPredicted RBP13.61□□□□□ -0.23
SHPRH-211ENST00000629427 SYCP3Q8IZU3 236 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 COMMD10Q9Y6G5 202 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 CNNM3Q8NE01 707 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 CDC5LQ99459 802 aaKnown RBP13.61□□□□□ -0.23
SHPRH-211ENST00000629427 CRACR2AQ9BSW2 395 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 ZBTB3Q9H5J0 574 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 ANO10Q9NW15 660 aa13.61□□□□□ -0.23
SHPRH-211ENST00000629427 GOLGA8AA7E2F4 631 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 KIF5CO60282 957 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 HOOK3Q86VS8 718 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 MAP3K2Q9Y2U5 619 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 SYNJ1O43426 1573 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 MYO1BO43795 1136 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 TDRD12Q587J7 1177 aaKnown RBP13.6□□□□□ -0.23
SHPRH-211ENST00000629427 CALML4Q96GE6 196 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 SPTY2D1Q68D10 685 aaPredicted RBP13.6□□□□□ -0.23
SHPRH-211ENST00000629427 BAG3O95817 575 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 ST5P78524 1137 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 USP8P40818 1118 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 LUZP1Q86V48 1076 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 TSPY2A6NKD2 308 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 TOP1P11387 765 aaKnown RBP13.6□□□□□ -0.23
SHPRH-211ENST00000629427 NME9Q86XW9 330 aa13.6□□□□□ -0.23
SHPRH-211ENST00000629427 PUF60Q9UHX1 559 aaKnown RBP13.6□□□□□ -0.23
SHPRH-211ENST00000629427 LRPPRCP42704 1394 aaKnown RBP13.59□□□□□ -0.23
SHPRH-211ENST00000629427 CABP5Q9NP86 173 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 AMOTL2Q9Y2J4 779 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 IFFO1Q0D2I5 559 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 LARP6Q9BRS8 491 aaKnown RBP13.59□□□□□ -0.23
SHPRH-211ENST00000629427 ARAP1Q96P48 1450 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 CETN1Q12798 172 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 DNAAF4Q8WXU2 420 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 UBXN4Q92575 508 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 SLFN5Q08AF3 891 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 KRT28Q7Z3Y7 464 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 CDK13Q14004 1512 aaKnown RBP13.59□□□□□ -0.23
SHPRH-211ENST00000629427 WDR97A6NE52 1622 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 HLA-DOAP06340 250 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 GRM1Q13255 1194 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 TMEM67Q5HYA8 995 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 STAMBPO95630 424 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 SFPQP23246 707 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHPRH-211ENST00000629427 KAT14Q9H8E8 782 aa13.59□□□□□ -0.23
SHPRH-211ENST00000629427 INCENPQ9NQS7 918 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms